Literature DB >> 16895323

Computational and theoretical methods to explore the relation between enzyme dynamics and catalysis.

Dimitri Antoniou1, Jodi Basner, Sara Núñez, Steven D Schwartz.   

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Year:  2006        PMID: 16895323     DOI: 10.1021/cr0503052

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   60.622


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  44 in total

1.  The enzymatic reaction catalyzed by lactate dehydrogenase exhibits one dominant reaction path.

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Journal:  Chem Phys       Date:  2014-10-16       Impact factor: 2.348

2.  Probing quantum and dynamic effects in concerted proton-electron transfer reactions of phenol-base compounds.

Authors:  Todd F Markle; Adam L Tenderholt; James M Mayer
Journal:  J Phys Chem B       Date:  2011-12-23       Impact factor: 2.991

3.  Good vibrations in enzyme-catalysed reactions.

Authors:  Sam Hay; Nigel S Scrutton
Journal:  Nat Chem       Date:  2012-01-29       Impact factor: 24.427

4.  Evidence that a 'dynamic knockout' in Escherichia coli dihydrofolate reductase does not affect the chemical step of catalysis.

Authors:  E Joel Loveridge; Enas M Behiry; Jiannan Guo; Rudolf K Allemann
Journal:  Nat Chem       Date:  2012-03-11       Impact factor: 24.427

5.  Slow conformational motions that favor sub-picosecond motions important for catalysis.

Authors:  J R Exequiel T Pineda; Dimitri Antoniou; Steven D Schwartz
Journal:  J Phys Chem B       Date:  2010-11-15       Impact factor: 2.991

6.  Dynamic origins of differential RNA binding function in two dsRBDs from the miRNA "microprocessor" complex.

Authors:  Christopher Wostenberg; Kaycee A Quarles; Scott A Showalter
Journal:  Biochemistry       Date:  2010-11-22       Impact factor: 3.162

7.  A dynamic view of enzyme catalysis.

Authors:  Aurora Jiménez; Pere Clapés; Ramon Crehuet
Journal:  J Mol Model       Date:  2008-03-06       Impact factor: 1.810

8.  Atomic detail of chemical transformation at the transition state of an enzymatic reaction.

Authors:  Suwipa Saen-Oon; Sara Quaytman-Machleder; Vern L Schramm; Steven D Schwartz
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-22       Impact factor: 11.205

9.  The general base in the thymidylate synthase catalyzed proton abstraction.

Authors:  Ananda K Ghosh; Zahidul Islam; Jonathan Krueger; Thelma Abeysinghe; Amnon Kohen
Journal:  Phys Chem Chem Phys       Date:  2015-12-14       Impact factor: 3.676

10.  Site-specific solvation of the photoexcited protochlorophyllide a in methanol: formation of the hydrogen-bonded intermediate state induced by hydrogen-bond strengthening.

Authors:  Guang-Jiu Zhao; Ke-Li Han
Journal:  Biophys J       Date:  2007-09-07       Impact factor: 4.033

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