Literature DB >> 12947189

A perspective on enzyme catalysis.

Stephen J Benkovic1, Sharon Hammes-Schiffer.   

Abstract

The seminal hypotheses proposed over the years for enzymatic catalysis are scrutinized. The historical record is explored from both biochemical and theoretical perspectives. Particular attention is given to the impact of molecular motions within the protein on the enzyme's catalytic properties. A case study for the enzyme dihydrofolate reductase provides evidence for coupled networks of predominantly conserved residues that influence the protein structure and motion. Such coupled networks have important implications for the origin and evolution of enzymes, as well as for protein engineering.

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Year:  2003        PMID: 12947189     DOI: 10.1126/science.1085515

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  277 in total

1.  Probing quantum and dynamic effects in concerted proton-electron transfer reactions of phenol-base compounds.

Authors:  Todd F Markle; Adam L Tenderholt; James M Mayer
Journal:  J Phys Chem B       Date:  2011-12-23       Impact factor: 2.991

2.  Analysis and elimination of a bias in targeted molecular dynamics simulations of conformational transitions: application to calmodulin.

Authors:  Victor Ovchinnikov; Martin Karplus
Journal:  J Phys Chem B       Date:  2012-03-28       Impact factor: 2.991

3.  Thermal-activated protein mobility and its correlation with catalysis in thermophilic alcohol dehydrogenase.

Authors:  Zhao-Xun Liang; Thomas Lee; Katheryn A Resing; Natalie G Ahn; Judith P Klinman
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-21       Impact factor: 11.205

4.  Single-molecule enzymology of RNA: essential functional groups impact catalysis from a distance.

Authors:  David Rueda; Gregory Bokinsky; Maria M Rhodes; Michael J Rust; Xiaowei Zhuang; Nils G Walter
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-24       Impact factor: 11.205

5.  Energy landscape of the prion protein helix 1 probed by metadynamics and NMR.

Authors:  Carlo Camilloni; Daniel Schaal; Kristian Schweimer; Stephan Schwarzinger; Alfonso De Simone
Journal:  Biophys J       Date:  2012-01-03       Impact factor: 4.033

6.  Taking Ockham's razor to enzyme dynamics and catalysis.

Authors:  David R Glowacki; Jeremy N Harvey; Adrian J Mulholland
Journal:  Nat Chem       Date:  2012-01-29       Impact factor: 24.427

7.  Resolving the complex role of enzyme conformational dynamics in catalytic function.

Authors:  Urmi Doshi; Lauren C McGowan; Safieh Tork Ladani; Donald Hamelberg
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-26       Impact factor: 11.205

8.  Structure of ALD1, a plant-specific homologue of the universal diaminopimelate aminotransferase enzyme of lysine biosynthesis.

Authors:  Vladimir Sobolev; Marvin Edelman; Orly Dym; Tamar Unger; Shira Albeck; Menny Kirma; Gad Galili
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-01-26

9.  Biophysical Characterization of a Disabled Double Mutant of Soybean Lipoxygenase: The "Undoing" of Precise Substrate Positioning Relative to Metal Cofactor and an Identified Dynamical Network.

Authors:  Shenshen Hu; Adam R Offenbacher; Erin M Thompson; Christine L Gee; Jarett Wilcoxen; Cody A M Carr; Daniil M Prigozhin; Vanessa Yang; Tom Alber; R David Britt; James S Fraser; Judith P Klinman
Journal:  J Am Chem Soc       Date:  2019-01-15       Impact factor: 15.419

10.  Directed Evolution as a Probe of Rate Promoting Vibrations Introduced via Mutational Change.

Authors:  Xi Chen; Steven D Schwartz
Journal:  Biochemistry       Date:  2018-03-22       Impact factor: 3.162

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