Literature DB >> 12084051

Environmentally coupled hydrogen tunneling. Linking catalysis to dynamics.

Michael J Knapp1, Judith P Klinman.   

Abstract

Many biological C-H activation reactions exhibit nonclassical kinetic isotope effects (KIEs). These nonclassical KIEs are too large (kH/kD > 7) and/or exhibit unusual temperature dependence such that the Arrhenius prefactor KIEs (AH/AD) fall outside of the semiclassical range near unity. The focus of this minireview is to discuss such KIEs within the context of the environmentally coupled hydrogen tunneling model. Full tunneling models of hydrogen transfer assume that protein or solvent fluctuations generate a reactive configuration along the classical, heavy-atom coordinate, from which the hydrogen transfers via nuclear tunneling. Environmentally coupled tunneling also invokes an environmental vibration (gating) that modulates the tunneling barrier, leading to a temperature-dependent KIE. These properties directly link enzyme fluctuations to the reaction coordinate for hydrogen transfer, making a quantum view of hydrogen transfer necessarily a dynamic view of catalysis. The environmentally coupled hydrogen tunneling model leads to a range of magnitudes of KIEs, which reflect the tunneling barrier, and a range of AH/AD values, which reflect the extent to which gating modulates hydrogen transfer. Gating is the primary determinant of the temperature dependence of the KIE within this model, providing insight into the importance of this motion in modulating the reaction coordinate. The potential use of variable temperature KIEs as a direct probe of coupling between environmental dynamics and the reaction coordinate is described. The evolution from application of a tunneling correction to a full tunneling model in enzymatic H transfer reactions is discussed in the context of a thermophilic alcohol dehydrogenase and soybean lipoxygenase-1.

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Year:  2002        PMID: 12084051     DOI: 10.1046/j.1432-1033.2002.03022.x

Source DB:  PubMed          Journal:  Eur J Biochem        ISSN: 0014-2956


  77 in total

1.  Temperature dependence of protein motions in a thermophilic dihydrofolate reductase and its relationship to catalytic efficiency.

Authors:  Olayinka A Oyeyemi; Kevin M Sours; Thomas Lee; Katheryn A Resing; Natalie G Ahn; Judith P Klinman
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-13       Impact factor: 11.205

2.  Synthesis of Site-Specifically 13C Labeled Linoleic Acids.

Authors:  Adam R Offenbacher; Hui Zhu; Judith P Klinman
Journal:  Tetrahedron Lett       Date:  2016-08-22       Impact factor: 2.415

3.  How an enzyme surmounts the activation energy barrier.

Authors:  Richard L Schowen
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-06       Impact factor: 11.205

4.  Thermal-activated protein mobility and its correlation with catalysis in thermophilic alcohol dehydrogenase.

Authors:  Zhao-Xun Liang; Thomas Lee; Katheryn A Resing; Natalie G Ahn; Judith P Klinman
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-21       Impact factor: 11.205

5.  Elusive transition state of alcohol dehydrogenase unveiled.

Authors:  Daniel Roston; Amnon Kohen
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-10       Impact factor: 11.205

Review 6.  Coupled motions in enzyme catalysis.

Authors:  Vishal C Nashine; Sharon Hammes-Schiffer; Stephen J Benkovic
Journal:  Curr Opin Chem Biol       Date:  2010-08-20       Impact factor: 8.822

7.  Protein-like proton exchange in a synthetic host cavity.

Authors:  William M Hart-Cooper; Carmelo Sgarlata; Charles L Perrin; F Dean Toste; Robert G Bergman; Kenneth N Raymond
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-30       Impact factor: 11.205

8.  The role of enzyme dynamics and tunnelling in catalysing hydride transfer: studies of distal mutants of dihydrofolate reductase.

Authors:  Lin Wang; Nina M Goodey; Stephen J Benkovic; Amnon Kohen
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-08-29       Impact factor: 6.237

9.  Role of Y94 in proton and hydride transfers catalyzed by thymidylate synthase.

Authors:  Baoyu Hong; Frank Maley; Amnon Kohen
Journal:  Biochemistry       Date:  2007-11-14       Impact factor: 3.162

Review 10.  Computer aided enzyme design and catalytic concepts.

Authors:  Maria P Frushicheva; Matthew J L Mills; Patrick Schopf; Manoj K Singh; Ram B Prasad; Arieh Warshel
Journal:  Curr Opin Chem Biol       Date:  2014-05-08       Impact factor: 8.822

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