Literature DB >> 20875970

Using a visual discrimination model for the detection of compression artifacts in virtual pathology images.

Jeffrey P Johnson1, Elizabeth A Krupinski, Michelle Yan, Hans Roehrig, Anna R Graham, Ronald S Weinstein.   

Abstract

A major issue in telepathology is the extremely large and growing size of digitized "virtual" slides, which can require several gigabytes of storage and cause significant delays in data transmission for remote image interpretation and interactive visualization by pathologists. Compression can reduce this massive amount of virtual slide data, but reversible (lossless) methods limit data reduction to less than 50%, while lossy compression can degrade image quality and diagnostic accuracy. "Visually lossless" compression offers the potential for using higher compression levels without noticeable artifacts, but requires a rate-control strategy that adapts to image content and loss visibility. We investigated the utility of a visual discrimination model (VDM) and other distortion metrics for predicting JPEG 2000 bit rates corresponding to visually lossless compression of virtual slides for breast biopsy specimens. Threshold bit rates were determined experimentally with human observers for a variety of tissue regions cropped from virtual slides. For test images compressed to their visually lossless thresholds, just-noticeable difference (JND) metrics computed by the VDM were nearly constant at the 95th percentile level or higher, and were significantly less variable than peak signal-to-noise ratio (PSNR) and structural similarity (SSIM) metrics. Our results suggest that VDM metrics could be used to guide the compression of virtual slides to achieve visually lossless compression while providing 5-12 times the data reduction of reversible methods.

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Mesh:

Year:  2010        PMID: 20875970      PMCID: PMC3881239          DOI: 10.1109/TMI.2010.2077308

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  17 in total

Review 1.  Telepathology overview: from concept to implementation.

Authors:  R S Weinstein; M R Descour; C Liang; A K Bhattacharyya; A R Graham; J R Davis; K M Scott; L Richter; E A Krupinski; J Szymus; K Kayser; B E Dunn
Journal:  Hum Pathol       Date:  2001-12       Impact factor: 3.466

2.  Using a human visual system model to optimize soft-copy mammography display: influence of display phosphor.

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3.  Image quality assessment: from error visibility to structural similarity.

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4.  Contrast in complex images.

Authors:  E Peli
Journal:  J Opt Soc Am A       Date:  1990-10       Impact factor: 2.129

5.  Digital imaging in pathology: the case for standardization.

Authors:  Yukako Yagi; John R Gilbertson
Journal:  J Telemed Telecare       Date:  2005       Impact factor: 6.184

6.  A European network for virtual microscopy--design, implementation and evaluation of performance.

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7.  The Psychophysics Toolbox.

Authors:  D H Brainard
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8.  Relations between the statistics of natural images and the response properties of cortical cells.

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Journal:  J Opt Soc Am A       Date:  1987-12       Impact factor: 2.129

9.  The importance of optical optimization in whole slide imaging (WSI) and digital pathology imaging.

Authors:  Yukako Yagi; John R Gilbertson
Journal:  Diagn Pathol       Date:  2008-07-15       Impact factor: 2.644

10.  A relationship between slide quality and image quality in whole slide imaging (WSI).

Authors:  Yukako Yagi; John R Gilbertson
Journal:  Diagn Pathol       Date:  2008-07-15       Impact factor: 2.644

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  8 in total

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4.  Structural similarity index family for image quality assessment in radiological images.

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Journal:  J Med Imaging (Bellingham)       Date:  2017-07-26

5.  Compressing pathology whole-slide images using a human and model observer evaluation.

Authors:  Elizabeth A Krupinski; Jeffrey P Johnson; Stacey Jaw; Anna R Graham; Ronald S Weinstein
Journal:  J Pathol Inform       Date:  2012-04-18

6.  Comment on "Quality evaluation of microscopy and scanned histological images for diagnostic purposes": Are scanners better than microscopes?

Authors:  Yukako Yagi; Liron Pantanowitz
Journal:  J Pathol Inform       Date:  2012-04-18

7.  The history of pathology informatics: A global perspective.

Authors:  Seung Park; Anil V Parwani; Raymond D Aller; Lech Banach; Michael J Becich; Stephan Borkenfeld; Alexis B Carter; Bruce A Friedman; Marcial Garcia Rojo; Andrew Georgiou; Gian Kayser; Klaus Kayser; Michael Legg; Christopher Naugler; Takashi Sawai; Hal Weiner; Dennis Winsten; Liron Pantanowitz
Journal:  J Pathol Inform       Date:  2013-05-30

8.  Video compression to support the expansion of whole-slide imaging into cytology.

Authors:  Mark D Zarella; Jennifer Jakubowski
Journal:  J Med Imaging (Bellingham)       Date:  2019-12-19
  8 in total

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