Literature DB >> 20859782

Off-resonance rf fields in heteronuclear NMR: Application to the study of slow motions.

S Zinn-Justin1, P Berthault, M Guenneugues, H Desvaux.   

Abstract

The advantages of using off-resonance rf fields in heteronuclear self-relaxation experiments are explored on a fully (15)N-enriched protein. It is firstly shown that in the absence of slow motions the longitudinal and transverse (15)N self-relaxation rate values derived with this method are in agreement with the ones measured by the classical inversion-recovery and Carr-Purcell-Meiboom-Gill (CPMG) sequences, respectively. Secondly, by comparing the (15)N transverse self-relaxation rates obtained by the proposed off-resonance sequence and by the CPMG sequence, 11 residues out of the 61 of toxin α are shown to exhibit a chemical exchange phenomenon in water on a time scale ranging from 1 µs to 100 ms. By varying the effective field amplitude, chemical exchange processes involving these residues are measured and the corresponding correlation times are evaluated without having assumed any motion model. Similar, though less precise, results are given by the analysis of the (15)N off-resonance self-relaxation rates on the basis of the Lipari-Szabo model to describe the fast internal dynamics of toxin α.

Entities:  

Year:  1997        PMID: 20859782     DOI: 10.1023/A:1018365815186

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  19 in total

1.  The complete covalent structure of a cardiotoxin from the venom of Naja nigricollis (African black-necked spitting cobra).

Authors:  L Fryklund; D Eaker
Journal:  Biochemistry       Date:  1975-07       Impact factor: 3.162

2.  Internal mobility in the partially folded DNA binding and dimerization domains of GAL4: NMR analysis of the N-H spectral density functions.

Authors:  J F Lefevre; K T Dayie; J W Peng; G Wagner
Journal:  Biochemistry       Date:  1996-02-27       Impact factor: 3.162

3.  Comparison of the backbone dynamics of a folded and an unfolded SH3 domain existing in equilibrium in aqueous buffer.

Authors:  N A Farrow; O Zhang; J D Forman-Kay; L E Kay
Journal:  Biochemistry       Date:  1995-01-24       Impact factor: 3.162

Review 4.  Hydrodynamic properties of complex, rigid, biological macromolecules: theory and applications.

Authors:  J G Garcia de la Torre; V A Bloomfield
Journal:  Q Rev Biophys       Date:  1981-02       Impact factor: 5.318

5.  Protein dynamics studied by rotating frame 15N spin relaxation times.

Authors:  T Szyperski; P Luginbühl; G Otting; P Güntert; K Wüthrich
Journal:  J Biomol NMR       Date:  1993-03       Impact factor: 2.835

6.  Three-dimensional solution structure of a curaremimetic toxin from Naja nigricollis venom: a proton NMR and molecular modeling study.

Authors:  S Zinn-Justin; C Roumestand; B Gilquin; F Bontems; A Ménez; F Toma
Journal:  Biochemistry       Date:  1992-11-24       Impact factor: 3.162

7.  Primary structure effects on peptide group hydrogen exchange.

Authors:  Y Bai; J S Milne; L Mayne; S W Englander
Journal:  Proteins       Date:  1993-09

8.  Rotational dynamics of calcium-free calmodulin studied by 15N-NMR relaxation measurements.

Authors:  N Tjandra; H Kuboniwa; H Ren; A Bax
Journal:  Eur J Biochem       Date:  1995-06-15

9.  Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions.

Authors:  M Piotto; V Saudek; V Sklenár
Journal:  J Biomol NMR       Date:  1992-11       Impact factor: 2.835

10.  Backbone dynamics of (1-71)bacterioopsin studied by two-dimensional 1H-15N NMR spectroscopy.

Authors:  K V Pervushin; A S Arseniev
Journal:  Eur J Biochem       Date:  1994-02-01
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  23 in total

1.  Separating the contributions to 15N transverse relaxation in a fibronectin type III domain.

Authors:  A E Meekhof; S M Freund
Journal:  J Biomol NMR       Date:  1999-05       Impact factor: 2.835

2.  Microsecond time scale dynamics in the RXR DNA-binding domain from a combination of spin-echo and off-resonance rotating frame relaxation measurements.

Authors:  F A Mulder; P J van Tilborg; R Kaptein; R Boelens
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

3.  Off-resonance effects in 15N T2 CPMG measurements.

Authors:  D M Korzhnev; E V Tischenko; A S Arseniev
Journal:  J Biomol NMR       Date:  2000-07       Impact factor: 2.835

4.  Off-resonance R1rho relaxation outside of the fast exchange limit: an experimental study of a cavity mutant of T4 lysozyme.

Authors:  Dmitry M Korzhnev; Vladislav Yu Orekhov; Frederick W Dahlquist; Lewis E Kay
Journal:  J Biomol NMR       Date:  2003-05       Impact factor: 2.835

5.  Motions and structural variability within toxins: implication for their use as scaffolds for protein engineering.

Authors:  Bernard Gilquin; Marjorie Bourgoin; Renée Ménez; Marie-Hélène Le Du; Denis Servent; Sophie Zinn-Justin; André Ménez
Journal:  Protein Sci       Date:  2003-02       Impact factor: 6.725

6.  Heteronuclear relaxation in time-dependent spin systems: (15)N-T1 (rho) dispersion during adiabatic fast passage.

Authors:  R Konrat; M Tollinger
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

7.  Direct determination of the heteronuclear T1/T2 ratio by off-resonance steady-state magnetization measurement: Investigation of the possible application to fast exchange characterization of 15N-labeled proteins.

Authors:  M Guenneugues; P Berthault; H Desvaux; M Goldman
Journal:  J Biomol NMR       Date:  1999-12       Impact factor: 2.835

8.  Structural basis for metal binding specificity: the N-terminal cadmium binding domain of the P1-type ATPase CadA.

Authors:  Lucia Banci; Ivano Bertini; Simone Ciofi-Baffoni; Xun-Cheng Su; Roger Miras; Nathalie Bal; Elisabeth Mintz; Patrice Catty; Jacob E Shokes; Robert A Scott
Journal:  J Mol Biol       Date:  2005-12-05       Impact factor: 5.469

9.  RAFFn relaxation rate functions.

Authors:  Dennis J Sorce; Shalom Michaeli
Journal:  J Magn Reson       Date:  2018-05-24       Impact factor: 2.229

10.  Local mobility of 15N labeled biomolecules characterized through cross-correlation rates: Applications to paramagnetic proteins.

Authors:  I C Felli; H Desvaux; G Bodenhausen
Journal:  J Biomol NMR       Date:  1998-11       Impact factor: 2.835

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