Literature DB >> 20012762

Local mobility of 15N labeled biomolecules characterized through cross-correlation rates: Applications to paramagnetic proteins.

I C Felli1, H Desvaux, G Bodenhausen.   

Abstract

The mobility of (15)N labeled proteins can be characterized by measuring the cross-correlation rates delta(N,NI) that govern the conversion of Zeeman order N(z) of an amide (15)N nucleus into longitudinal two-spin order 2N(z)I(z) involving the amide (15)N and (1)H nuclei. This represents an alternative to the measurement of (15)N self-relaxation rates 1/T(1) and 1/T(2) or 1/T(1rho). The rate of interconversion between N(z) and 2N(z)I(z) is due to cross-correlation between fluctuations of different interactions and is not affected by a variety of relaxation mechanisms that contribute to the self-relaxation rates 1/T(1), 1/T(2) and 1/T(1rho). Spin diffusion among protons, which affects the measurements, can be quenched by various means that are evaluated by experiments and simulations. By applying an off-resonance radio-frequency (RF) field in the vicinity of the nitrogen resonance, the spectral density function J(omega) can be determined at the frequency origin and at the nitrogen Larmor frequency. The methods are applied to the paramagnetic High-Potential Iron-Sulfur Protein iso I (HiPIP I) from E. halophila in its reduced state.

Entities:  

Year:  1998        PMID: 20012762     DOI: 10.1023/A:1008301016608

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  20 in total

1.  A complete relaxation matrix refinement of the solution structure of a paramagnetic metalloprotein: reduced HiPIP I from Ectothiorhodospira halophila.

Authors:  I Bertini; I C Felli; C Luchinat; A Rosato
Journal:  Proteins       Date:  1996-02

2.  Direct measurement of angles between bond vectors in high-resolution NMR.

Authors:  B Reif; M Hennig; C Griesinger
Journal:  Science       Date:  1997-05-23       Impact factor: 47.728

3.  Study of protein dynamics in solution by measurement of (13)C (α)- (13)CO NOE and (13)CO longitudinal relaxation.

Authors:  L Zeng; M W Fischer; E R Zuiderweg
Journal:  J Biomol NMR       Date:  1996-03       Impact factor: 2.835

4.  Measurement of (13)C (α)- (13)CO cross-relaxation rates in (15)N-/ (13)C-labelled proteins.

Authors:  F Cordier; B Brutscher; D Marion
Journal:  J Biomol NMR       Date:  1996-03       Impact factor: 2.835

5.  Internal mobility in the partially folded DNA binding and dimerization domains of GAL4: NMR analysis of the N-H spectral density functions.

Authors:  J F Lefevre; K T Dayie; J W Peng; G Wagner
Journal:  Biochemistry       Date:  1996-02-27       Impact factor: 3.162

6.  The three-dimensional structure in solution of the paramagnetic high-potential iron-sulfur protein I from Ectothiorhodospira halophila through nuclear magnetic resonance.

Authors:  L Banci; I Bertini; L D Eltis; I C Felli; D H Kastrau; C Luchinat; M Piccioli; R Pierattelli; M Smith
Journal:  Eur J Biochem       Date:  1994-10-15

7.  The molecular structure of the high potential iron-sulfur protein isolated from Ectothiorhodospira halophila determined at 2.5-A resolution.

Authors:  D R Breiter; T E Meyer; I Rayment; H M Holden
Journal:  J Biol Chem       Date:  1991-10-05       Impact factor: 5.157

8.  Backbone dynamics of proteins as studied by 15N inverse detected heteronuclear NMR spectroscopy: application to staphylococcal nuclease.

Authors:  L E Kay; D A Torchia; A Bax
Journal:  Biochemistry       Date:  1989-11-14       Impact factor: 3.162

9.  Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions.

Authors:  M Piotto; V Saudek; V Sklenár
Journal:  J Biomol NMR       Date:  1992-11       Impact factor: 2.835

10.  Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation.

Authors:  N A Farrow; R Muhandiram; A U Singer; S M Pascal; C M Kay; G Gish; S E Shoelson; T Pawson; J D Forman-Kay; L E Kay
Journal:  Biochemistry       Date:  1994-05-17       Impact factor: 3.162

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  6 in total

1.  Fast NMR data acquisition from bicelles containing a membrane-associated peptide at natural-abundance.

Authors:  Kazutoshi Yamamoto; Subramanian Vivekanandan; Ayyalusamy Ramamoorthy
Journal:  J Phys Chem B       Date:  2011-10-11       Impact factor: 2.991

2.  Direct determination of the heteronuclear T1/T2 ratio by off-resonance steady-state magnetization measurement: Investigation of the possible application to fast exchange characterization of 15N-labeled proteins.

Authors:  M Guenneugues; P Berthault; H Desvaux; M Goldman
Journal:  J Biomol NMR       Date:  1999-12       Impact factor: 2.835

3.  Quantitative estimation of magnitude and orientation of the CSA tensor from field dependence of longitudinal NMR relaxation rates.

Authors:  P Damberg; J Jarvet; P Allard; A Gräslund
Journal:  J Biomol NMR       Date:  1999-09       Impact factor: 2.835

4.  Measurement of ¹⁵N relaxation rates in perdeuterated proteins by TROSY-based methods.

Authors:  Nils-Alexander Lakomek; Jinfa Ying; Ad Bax
Journal:  J Biomol NMR       Date:  2012-06-12       Impact factor: 2.835

5.  A TROSY CPMG sequence for characterizing chemical exchange in large proteins.

Authors:  J P Loria; M Rance; A G Palmer
Journal:  J Biomol NMR       Date:  1999-10       Impact factor: 2.835

6.  Eta(z)/kappa: a transverse relaxation optimized spectroscopy NMR experiment measuring longitudinal relaxation interference.

Authors:  Daniel S Weaver; Erik R P Zuiderweg
Journal:  J Chem Phys       Date:  2008-04-21       Impact factor: 3.488

  6 in total

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