Literature DB >> 20846851

High-throughput, single-cell NF-κB dynamics.

Timothy K Lee1, Markus W Covert.   

Abstract

Single cells in a population often respond differently to perturbations in the environment. Live-cell microscopy has enabled scientists to observe these differences at the single-cell level. Some advantages of live-cell imaging over population-based methods include better time resolution, higher sensitivity, automation, and richer datasets. One specific area where live-cell microscopy has made a significant impact is the field of NF-κB signaling dynamics, and recent efforts have focused on making live-cell imaging of these dynamics more high-throughput. We highlight the major aspects of increasing throughput and describe a current system that can monitor, image and analyze the NF-κB activation of thousands of single cells in parallel.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20846851      PMCID: PMC2982878          DOI: 10.1016/j.gde.2010.08.005

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  54 in total

1.  Versatile, fully automated, microfluidic cell culture system.

Authors:  Rafael Gómez-Sjöberg; Anne A Leyrat; Dana M Pirone; Christopher S Chen; Stephen R Quake
Journal:  Anal Chem       Date:  2007-10-23       Impact factor: 6.986

2.  Deterministic and stochastic models of NFkappaB pathway.

Authors:  Tomasz Lipniacki; Marek Kimmel
Journal:  Cardiovasc Toxicol       Date:  2007-10-18       Impact factor: 3.231

3.  Dynamic proteomics of individual cancer cells in response to a drug.

Authors:  A A Cohen; N Geva-Zatorsky; E Eden; M Frenkel-Morgenstern; I Issaeva; A Sigal; R Milo; C Cohen-Saidon; Y Liron; Z Kam; L Cohen; T Danon; N Perzov; U Alon
Journal:  Science       Date:  2008-11-20       Impact factor: 47.728

4.  High content cell screening in a microfluidic device.

Authors:  Raymond Cheong; Chiaochun Joanne Wang; Andre Levchenko
Journal:  Mol Cell Proteomics       Date:  2008-10-24       Impact factor: 5.911

5.  Encoding NF-kappaB temporal control in response to TNF: distinct roles for the negative regulators IkappaBalpha and A20.

Authors:  Shannon L Werner; Jeffrey D Kearns; Victoria Zadorozhnaya; Candace Lynch; Ellen O'Dea; Mark P Boldin; Averil Ma; David Baltimore; Alexander Hoffmann
Journal:  Genes Dev       Date:  2008-08-01       Impact factor: 11.361

6.  Pulsatile stimulation determines timing and specificity of NF-kappaB-dependent transcription.

Authors:  Louise Ashall; Caroline A Horton; David E Nelson; Pawel Paszek; Claire V Harper; Kate Sillitoe; Sheila Ryan; David G Spiller; John F Unitt; David S Broomhead; Douglas B Kell; David A Rand; Violaine Sée; Michael R H White
Journal:  Science       Date:  2009-04-10       Impact factor: 47.728

7.  Dynamic effect of bortezomib on nuclear factor-kappaB activity and gene expression in tumor cells.

Authors:  Myong-Hee Sung; Lorena Bagain; Zhong Chen; Tatiana Karpova; Xinping Yang; Christopher Silvin; Ty C Voss; James G McNally; Carter Van Waes; Gordon L Hager
Journal:  Mol Pharmacol       Date:  2008-08-06       Impact factor: 4.436

8.  Positive feedback of G1 cyclins ensures coherent cell cycle entry.

Authors:  Jan M Skotheim; Stefano Di Talia; Eric D Siggia; Frederick R Cross
Journal:  Nature       Date:  2008-07-17       Impact factor: 49.962

9.  Nuclear translocation kinetics of NF-kappaB in macrophages challenged with pathogens in a microfluidic platform.

Authors:  Conrad D James; Matthew W Moorman; Bryan D Carson; Catherine S Branda; Jeffrey W Lantz; Ronald P Manginell; Anthony Martino; Anup K Singh
Journal:  Biomed Microdevices       Date:  2009-06       Impact factor: 2.838

10.  Single TNFalpha trimers mediating NF-kappaB activation: stochastic robustness of NF-kappaB signaling.

Authors:  Tomasz Lipniacki; Krzysztof Puszynski; Pawel Paszek; Allan R Brasier; Marek Kimmel
Journal:  BMC Bioinformatics       Date:  2007-10-09       Impact factor: 3.169

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  15 in total

1.  Observing single cell NF-κB dynamics under stimulant concentration gradient.

Authors:  Yousef Awwad; Tao Geng; Albert S Baldwin; Chang Lu
Journal:  Anal Chem       Date:  2012-01-19       Impact factor: 6.986

Review 2.  Recent advances in single-cell studies of gene regulation.

Authors:  Jangir Selimkhanov; Jeff Hasty; Lev S Tsimring
Journal:  Curr Opin Biotechnol       Date:  2011-12-06       Impact factor: 9.740

Review 3.  Hierarchies of NF-κB target-gene regulation.

Authors:  Stephen T Smale
Journal:  Nat Immunol       Date:  2011-07-19       Impact factor: 25.606

4.  Network topologies and dynamics leading to endotoxin tolerance and priming in innate immune cells.

Authors:  Yan Fu; Trevor Glaros; Meng Zhu; Ping Wang; Zhanghan Wu; John J Tyson; Liwu Li; Jianhua Xing
Journal:  PLoS Comput Biol       Date:  2012-05-17       Impact factor: 4.475

5.  Induction of the pro-inflammatory NF-kB-sensitive miRNA-146a by human neurotrophic viruses.

Authors:  James M Hill; Christian Clement; Yuhai Zhao; Walter J Lukiw
Journal:  Front Microbiol       Date:  2015-02-03       Impact factor: 5.640

6.  Single-cell and population NF-κB dynamic responses depend on lipopolysaccharide preparation.

Authors:  Miriam V Gutschow; Jacob J Hughey; Nicholas A Ruggero; Bryce T Bajar; Sean D Valle; Markus W Covert
Journal:  PLoS One       Date:  2013-01-03       Impact factor: 3.240

7.  Automated analysis of NF-κB nuclear translocation kinetics in high-throughput screening.

Authors:  Zi Di; Bram Herpers; Lisa Fredriksson; Kuan Yan; Bob van de Water; Fons J Verbeek; John H N Meerman
Journal:  PLoS One       Date:  2012-12-27       Impact factor: 3.240

8.  Light microscopy applications in systems biology: opportunities and challenges.

Authors:  Paul Michel Aloyse Antony; Christophe Trefois; Aleksandar Stojanovic; Aidos Sagatovich Baumuratov; Karol Kozak
Journal:  Cell Commun Signal       Date:  2013-04-11       Impact factor: 5.712

Review 9.  The Many Alternative Faces of Macrophage Activation.

Authors:  David A Hume
Journal:  Front Immunol       Date:  2015-07-22       Impact factor: 7.561

10.  Live cell imaging reveals marked variability in myoblast proliferation and fate.

Authors:  Sean M Gross; Peter Rotwein
Journal:  Skelet Muscle       Date:  2013-05-02       Impact factor: 4.912

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