Literature DB >> 22154220

Recent advances in single-cell studies of gene regulation.

Jangir Selimkhanov1, Jeff Hasty, Lev S Tsimring.   

Abstract

A mechanistic understanding of gene regulatory network dynamics requires quantitative single-cell data of multiple network components in response to well-defined perturbations. Recent advances in the development of fluorescent biomarkers for proteins, detection of RNA and interactions, microfluidic technology, and high-resolution imaging have set the stage for a host of new studies that elucidate the important roles of stochasticity and cell-cell variability in response to external perturbations. In this review, we briefly describe methods for high-resolution visualization and the control of gene expression, along with application of these novel methods to recent studies involving gene networks.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 22154220      PMCID: PMC3273644          DOI: 10.1016/j.copbio.2011.11.006

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  54 in total

1.  Simultaneous visualization of multiple protein interactions in living cells using multicolor fluorescence complementation analysis.

Authors:  Chang-Deng Hu; Tom K Kerppola
Journal:  Nat Biotechnol       Date:  2003-04-14       Impact factor: 54.908

2.  Probing transcription factor dynamics at the single-molecule level in a living cell.

Authors:  Johan Elf; Gene-Wei Li; X Sunney Xie
Journal:  Science       Date:  2007-05-25       Impact factor: 47.728

Review 3.  Single-molecule approach to molecular biology in living bacterial cells.

Authors:  X Sunney Xie; Paul J Choi; Gene-Wei Li; Nam Ki Lee; Giuseppe Lia
Journal:  Annu Rev Biophys       Date:  2008       Impact factor: 12.981

4.  Single molecule measurement of the "speed limit" of DNA polymerase.

Authors:  Jerrod J Schwartz; Stephen R Quake
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-11       Impact factor: 11.205

5.  A synthetic genetic edge detection program.

Authors:  Jeffrey J Tabor; Howard M Salis; Zachary Booth Simpson; Aaron A Chevalier; Anselm Levskaya; Edward M Marcotte; Christopher A Voigt; Andrew D Ellington
Journal:  Cell       Date:  2009-06-26       Impact factor: 41.582

6.  Conformational plasticity and dynamics in the generic protein folding catalyst SlyD unraveled by single-molecule FRET.

Authors:  Dana Kahra; Michael Kovermann; Christian Löw; Verena Hirschfeld; Caroline Haupt; Jochen Balbach; Christian Gerhard Hübner
Journal:  J Mol Biol       Date:  2011-05-07       Impact factor: 5.469

Review 7.  Microfluidic devices for measuring gene network dynamics in single cells.

Authors:  Matthew R Bennett; Jeff Hasty
Journal:  Nat Rev Genet       Date:  2009-08-11       Impact factor: 53.242

8.  A synthetic three-color scaffold for monitoring genetic regulation and noise.

Authors:  Robert Sidney Cox; Mary J Dunlop; Michael B Elowitz
Journal:  J Biol Eng       Date:  2010-07-21       Impact factor: 4.355

Review 9.  Single-molecule approaches to stochastic gene expression.

Authors:  Arjun Raj; Alexander van Oudenaarden
Journal:  Annu Rev Biophys       Date:  2009       Impact factor: 12.981

10.  Sustained oscillations of NF-kappaB produce distinct genome scanning and gene expression profiles.

Authors:  Myong-Hee Sung; Luigi Salvatore; Rossana De Lorenzi; Anindya Indrawan; Manolis Pasparakis; Gordon L Hager; Marco E Bianchi; Alessandra Agresti
Journal:  PLoS One       Date:  2009-09-29       Impact factor: 3.240

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  4 in total

Review 1.  Noise in biology.

Authors:  Lev S Tsimring
Journal:  Rep Prog Phys       Date:  2014-01-20

Review 2.  A new toolbox for assessing single cells.

Authors:  Konstantinos Tsioris; Alexis J Torres; Thomas B Douce; J Christopher Love
Journal:  Annu Rev Chem Biomol Eng       Date:  2014       Impact factor: 11.059

3.  A model for aryl hydrocarbon receptor-activated gene expression shows potency and efficacy changes and predicts squelching due to competition for transcription co-activators.

Authors:  Ted W Simon; Robert A Budinsky; J Craig Rowlands
Journal:  PLoS One       Date:  2015-06-03       Impact factor: 3.240

4.  Adaptive imaging cytometry to estimate parameters of gene networks models in systems and synthetic biology.

Authors:  David A Ball; Matthew W Lux; Neil R Adames; Jean Peccoud
Journal:  PLoS One       Date:  2014-09-11       Impact factor: 3.240

  4 in total

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