Literature DB >> 20844917

Managing biomedical image metadata for search and retrieval of similar images.

Daniel Korenblum1, Daniel Rubin, Sandy Napel, Cesar Rodriguez, Chris Beaulieu.   

Abstract

Radiology images are generally disconnected from the metadata describing their contents, such as imaging observations ("semantic" metadata), which are usually described in text reports that are not directly linked to the images. We developed a system, the Biomedical Image Metadata Manager (BIMM) to (1) address the problem of managing biomedical image metadata and (2) facilitate the retrieval of similar images using semantic feature metadata. Our approach allows radiologists, researchers, and students to take advantage of the vast and growing repositories of medical image data by explicitly linking images to their associated metadata in a relational database that is globally accessible through a Web application. BIMM receives input in the form of standard-based metadata files using Web service and parses and stores the metadata in a relational database allowing efficient data query and maintenance capabilities. Upon querying BIMM for images, 2D regions of interest (ROIs) stored as metadata are automatically rendered onto preview images included in search results. The system's "match observations" function retrieves images with similar ROIs based on specific semantic features describing imaging observation characteristics (IOCs). We demonstrate that the system, using IOCs alone, can accurately retrieve images with diagnoses matching the query images, and we evaluate its performance on a set of annotated liver lesion images. BIMM has several potential applications, e.g., computer-aided detection and diagnosis, content-based image retrieval, automating medical analysis protocols, and gathering population statistics like disease prevalences. The system provides a framework for decision support systems, potentially improving their diagnostic accuracy and selection of appropriate therapies.

Entities:  

Mesh:

Year:  2011        PMID: 20844917      PMCID: PMC3138941          DOI: 10.1007/s10278-010-9328-z

Source DB:  PubMed          Journal:  J Digit Imaging        ISSN: 0897-1889            Impact factor:   4.056


  14 in total

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Authors:  G D Rubin
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2.  IML: An image markup language.

Authors:  W B Lober; L J Trigg; D Bliss; J M Brinkley
Journal:  Proc AMIA Symp       Date:  2001

3.  Some historical remarks on picture archiving and communication systems.

Authors:  H K Huang
Journal:  Comput Med Imaging Graph       Date:  2003       Impact factor: 4.790

4.  Automated retrieval of CT images of liver lesions on the basis of image similarity: method and preliminary results.

Authors:  Sandy A Napel; Christopher F Beaulieu; Cesar Rodriguez; Jingyu Cui; Jiajing Xu; Ankit Gupta; Daniel Korenblum; Hayit Greenspan; Yongjun Ma; Daniel L Rubin
Journal:  Radiology       Date:  2010-05-26       Impact factor: 11.105

5.  caGrid 1.0: an enterprise Grid infrastructure for biomedical research.

Authors:  Scott Oster; Stephen Langella; Shannon Hastings; David Ervin; Ravi Madduri; Joshua Phillips; Tahsin Kurc; Frank Siebenlist; Peter Covitz; Krishnakant Shanbhag; Ian Foster; Joel Saltz
Journal:  J Am Med Inform Assoc       Date:  2007-12-20       Impact factor: 4.497

6.  GoldMiner: a radiology image search engine.

Authors:  Charles E Kahn; Cheng Thao
Journal:  AJR Am J Roentgenol       Date:  2007-06       Impact factor: 3.959

7.  Yale Image Finder (YIF): a new search engine for retrieving biomedical images.

Authors:  Songhua Xu; James McCusker; Michael Krauthammer
Journal:  Bioinformatics       Date:  2008-07-09       Impact factor: 6.937

8.  iPad: Semantic annotation and markup of radiological images.

Authors:  Daniel L Rubin; Cesar Rodriguez; Priyanka Shah; Chris Beaulieu
Journal:  AMIA Annu Symp Proc       Date:  2008-11-06

9.  The IR Radlex Project: an interventional radiology lexicon--a collaborative project of the Radiological Society of North America and the Society of Interventional Radiology.

Authors:  Sanjoy Kundu; Maxim Itkin; Debra A Gervais; Venkataramu N Krishnamurthy; Michael J Wallace; John F Cardella; Daniel L Rubin; Curtis P Langlotz
Journal:  J Vasc Interv Radiol       Date:  2009-07       Impact factor: 3.464

10.  The caBIG annotation and image Markup project.

Authors:  David S Channin; Pattanasak Mongkolwat; Vladimir Kleper; Kastubh Sepukar; Daniel L Rubin
Journal:  J Digit Imaging       Date:  2009-03-18       Impact factor: 4.056

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  12 in total

1.  Informatics methods to enable sharing of quantitative imaging research data.

Authors:  Mia A Levy; John B Freymann; Justin S Kirby; Andriy Fedorov; Fiona M Fennessy; Steven A Eschrich; Anders E Berglund; David A Fenstermacher; Yongqiang Tan; Xiaotao Guo; Thomas L Casavant; Bartley J Brown; Terry A Braun; Andre Dekker; Erik Roelofs; James M Mountz; Fernando Boada; Charles Laymon; Matt Oborski; Daniel L Rubin
Journal:  Magn Reson Imaging       Date:  2012-07-06       Impact factor: 2.546

2.  Special Section Guest Editorial:Radiomics and Imaging Genomics: Quantitative Imaging for Precision Medicine.

Authors:  Sandy Napel; Maryellen Giger
Journal:  J Med Imaging (Bellingham)       Date:  2015-12-11

Review 3.  Mechanism-Based Modeling of Tumor Growth and Treatment Response Constrained by Multiparametric Imaging Data.

Authors:  David A Hormuth; Angela M Jarrett; Ernesto A B F Lima; Matthew T McKenna; David T Fuentes; Thomas E Yankeelov
Journal:  JCO Clin Cancer Inform       Date:  2019-02

4.  Automatic annotation of radiological observations in liver CT images.

Authors:  Francisco Gimenez; Jiajing Xu; Yi Liu; Tiffany Liu; Christopher Beaulieu; Daniel Rubin; Sandy Napel
Journal:  AMIA Annu Symp Proc       Date:  2012-11-03

5.  A hierarchical knowledge-based approach for retrieving similar medical images described with semantic annotations.

Authors:  Camille Kurtz; Christopher F Beaulieu; Sandy Napel; Daniel L Rubin
Journal:  J Biomed Inform       Date:  2014-03-12       Impact factor: 6.317

6.  DCMDSM: a DICOM decomposed storage model.

Authors:  Alexandre Savaris; Theo Härder; Aldo von Wangenheim
Journal:  J Am Med Inform Assoc       Date:  2014-02-03       Impact factor: 4.497

Review 7.  Overview on subjective similarity of images for content-based medical image retrieval.

Authors:  Chisako Muramatsu
Journal:  Radiol Phys Technol       Date:  2018-05-08

8.  Automated tracking of quantitative assessments of tumor burden in clinical trials.

Authors:  Daniel L Rubin; Debra Willrett; Martin J O'Connor; Cleber Hage; Camille Kurtz; Dilvan A Moreira
Journal:  Transl Oncol       Date:  2014-02-01       Impact factor: 4.243

9.  On combining image-based and ontological semantic dissimilarities for medical image retrieval applications.

Authors:  Camille Kurtz; Adrien Depeursinge; Sandy Napel; Christopher F Beaulieu; Daniel L Rubin
Journal:  Med Image Anal       Date:  2014-07-02       Impact factor: 8.545

10.  Utilisation of a thoracic oncology database to capture radiological and pathological images for evaluation of response to chemotherapy in patients with malignant pleural mesothelioma.

Authors:  George B Carey; Stephanie Kazantsev; Mosmi Surati; Cleo E Rolle; Archana Kanteti; Ahad Sadiq; Neil Bahroos; Brigitte Raumann; Ravi Madduri; Paul Dave; Adam Starkey; Thomas Hensing; Aliya N Husain; Everett E Vokes; Wickii Vigneswaran; Samuel G Armato; Hedy L Kindler; Ravi Salgia
Journal:  BMJ Open       Date:  2012-10-26       Impact factor: 2.692

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