Literature DB >> 18999144

iPad: Semantic annotation and markup of radiological images.

Daniel L Rubin1, Cesar Rodriguez, Priyanka Shah, Chris Beaulieu.   

Abstract

Radiological images contain a wealth of information,such as anatomy and pathology, which is often not explicit and computationally accessible. Information schemes are being developed to describe the semantic content of images, but such schemes can be unwieldy to operationalize because there are few tools to enable users to capture structured information easily as part of the routine research workflow. We have created iPad, an open source tool enabling researchers and clinicians to create semantic annotations on radiological images. iPad hides the complexity of the underlying image annotation information model from users, permitting them to describe images and image regions using a graphical interface that maps their descriptions to structured ontologies semi-automatically. Image annotations are saved in a variety of formats,enabling interoperability among medical records systems, image archives in hospitals, and the Semantic Web. Tools such as iPad can help reduce the burden of collecting structured information from images, and it could ultimately enable researchers and physicians to exploit images on a very large scale and glean the biological and physiological significance of image content.

Mesh:

Year:  2008        PMID: 18999144      PMCID: PMC2655990     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  7 in total

1.  Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.

Authors:  A Brazma; P Hingamp; J Quackenbush; G Sherlock; P Spellman; C Stoeckert; J Aach; W Ansorge; C A Ball; H C Causton; T Gaasterland; P Glenisson; F C Holstege; I F Kim; V Markowitz; J C Matese; H Parkinson; A Robinson; U Sarkans; S Schulze-Kremer; J Stewart; R Taylor; J Vilo; M Vingron
Journal:  Nat Genet       Date:  2001-12       Impact factor: 38.330

2.  IML: An image markup language.

Authors:  W B Lober; L J Trigg; D Bliss; J M Brinkley
Journal:  Proc AMIA Symp       Date:  2001

3.  Image annotation for conveying automated lung nodule detection results to radiologists.

Authors:  Samuel G Armato
Journal:  Acad Radiol       Date:  2003-09       Impact factor: 3.173

4.  Online annotation tool for digital mammography.

Authors:  Yuanshui Zheng; Min Wu; Elodia Cole; Etta D Pisano
Journal:  Acad Radiol       Date:  2004-05       Impact factor: 3.173

5.  The MGED Ontology: a resource for semantics-based description of microarray experiments.

Authors:  Patricia L Whetzel; Helen Parkinson; Helen C Causton; Liju Fan; Jennifer Fostel; Gilberto Fragoso; Laurence Game; Mervi Heiskanen; Norman Morrison; Philippe Rocca-Serra; Susanna-Assunta Sansone; Chris Taylor; Joseph White; Christian J Stoeckert
Journal:  Bioinformatics       Date:  2006-01-21       Impact factor: 6.937

6.  RadLex: a new method for indexing online educational materials.

Authors:  Curtis P Langlotz
Journal:  Radiographics       Date:  2006 Nov-Dec       Impact factor: 5.333

Review 7.  OsiriX: an open-source software for navigating in multidimensional DICOM images.

Authors:  Antoine Rosset; Luca Spadola; Osman Ratib
Journal:  J Digit Imaging       Date:  2004-06-29       Impact factor: 4.056

  7 in total
  30 in total

1.  Managing biomedical image metadata for search and retrieval of similar images.

Authors:  Daniel Korenblum; Daniel Rubin; Sandy Napel; Cesar Rodriguez; Chris Beaulieu
Journal:  J Digit Imaging       Date:  2011-08       Impact factor: 4.056

2.  Automated retrieval of CT images of liver lesions on the basis of image similarity: method and preliminary results.

Authors:  Sandy A Napel; Christopher F Beaulieu; Cesar Rodriguez; Jingyu Cui; Jiajing Xu; Ankit Gupta; Daniel Korenblum; Hayit Greenspan; Yongjun Ma; Daniel L Rubin
Journal:  Radiology       Date:  2010-05-26       Impact factor: 11.105

3.  Informatics methods to enable sharing of quantitative imaging research data.

Authors:  Mia A Levy; John B Freymann; Justin S Kirby; Andriy Fedorov; Fiona M Fennessy; Steven A Eschrich; Anders E Berglund; David A Fenstermacher; Yongqiang Tan; Xiaotao Guo; Thomas L Casavant; Bartley J Brown; Terry A Braun; Andre Dekker; Erik Roelofs; James M Mountz; Fernando Boada; Charles Laymon; Matt Oborski; Daniel L Rubin
Journal:  Magn Reson Imaging       Date:  2012-07-06       Impact factor: 2.546

4.  Non-small cell lung cancer: identifying prognostic imaging biomarkers by leveraging public gene expression microarray data--methods and preliminary results.

Authors:  Olivier Gevaert; Jiajing Xu; Chuong D Hoang; Ann N Leung; Yue Xu; Andrew Quon; Daniel L Rubin; Sandy Napel; Sylvia K Plevritis
Journal:  Radiology       Date:  2012-06-21       Impact factor: 11.105

5.  Semantic annotation of 3D anatomical models to support diagnosis and follow-up analysis of musculoskeletal pathologies.

Authors:  Imon Banerjee; Chiara Eva Catalano; Giuseppe Patané; Michela Spagnuolo
Journal:  Int J Comput Assist Radiol Surg       Date:  2015-11-28       Impact factor: 2.924

Review 6.  Imaging informatics: essential tools for the delivery of imaging services.

Authors:  David S Mendelson; Daniel L Rubin
Journal:  Acad Radiol       Date:  2013-10       Impact factor: 3.173

7.  [Why radiologists should be concerned with semantics].

Authors:  A Gerstmair; E Kotter
Journal:  Radiologe       Date:  2013-08       Impact factor: 0.635

8.  Visual Interpretation with Three-Dimensional Annotations (VITA): three-dimensional image interpretation tool for radiological reporting.

Authors:  Sharmili Roy; Michael S Brown; George L Shih
Journal:  J Digit Imaging       Date:  2014-02       Impact factor: 4.056

9.  Semantic reasoning with image annotations for tumor assessment.

Authors:  Mia A Levy; Martin J O'Connor; Daniel L Rubin
Journal:  AMIA Annu Symp Proc       Date:  2009-11-14

10.  Automated tracking of quantitative assessments of tumor burden in clinical trials.

Authors:  Daniel L Rubin; Debra Willrett; Martin J O'Connor; Cleber Hage; Camille Kurtz; Dilvan A Moreira
Journal:  Transl Oncol       Date:  2014-02-01       Impact factor: 4.243

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