Literature DB >> 24632078

A hierarchical knowledge-based approach for retrieving similar medical images described with semantic annotations.

Camille Kurtz1, Christopher F Beaulieu2, Sandy Napel2, Daniel L Rubin3.   

Abstract

Computer-assisted image retrieval applications could assist radiologist interpretations by identifying similar images in large archives as a means to providing decision support. However, the semantic gap between low-level image features and their high level semantics may impair the system performances. Indeed, it can be challenging to comprehensively characterize the images using low-level imaging features to fully capture the visual appearance of diseases on images, and recently the use of semantic terms has been advocated to provide semantic descriptions of the visual contents of images. However, most of the existing image retrieval strategies do not consider the intrinsic properties of these terms during the comparison of the images beyond treating them as simple binary (presence/absence) features. We propose a new framework that includes semantic features in images and that enables retrieval of similar images in large databases based on their semantic relations. It is based on two main steps: (1) annotation of the images with semantic terms extracted from an ontology, and (2) evaluation of the similarity of image pairs by computing the similarity between the terms using the Hierarchical Semantic-Based Distance (HSBD) coupled to an ontological measure. The combination of these two steps provides a means of capturing the semantic correlations among the terms used to characterize the images that can be considered as a potential solution to deal with the semantic gap problem. We validate this approach in the context of the retrieval and the classification of 2D regions of interest (ROIs) extracted from computed tomographic (CT) images of the liver. Under this framework, retrieval accuracy of more than 0.96 was obtained on a 30-images dataset using the Normalized Discounted Cumulative Gain (NDCG) index that is a standard technique used to measure the effectiveness of information retrieval algorithms when a separate reference standard is available. Classification results of more than 95% were obtained on a 77-images dataset. For comparison purpose, the use of the Earth Mover's Distance (EMD), which is an alternative distance metric that considers all the existing relations among the terms, led to results retrieval accuracy of 0.95 and classification results of 93% with a higher computational cost. The results provided by the presented framework are competitive with the state-of-the-art and emphasize the usefulness of the proposed methodology for radiology image retrieval and classification.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Computed tomographic (CT) images; Image retrieval; Liver lesions; Ontologies; Semantic image annotation; Semantic-based distances

Mesh:

Year:  2014        PMID: 24632078      PMCID: PMC4058405          DOI: 10.1016/j.jbi.2014.02.018

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN: 1532-0464            Impact factor:   6.317


  24 in total

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2.  An ontology-based measure to compute semantic similarity in biomedicine.

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Review 3.  Content-based image retrieval in radiology: current status and future directions.

Authors:  Ceyhun Burak Akgül; Daniel L Rubin; Sandy Napel; Christopher F Beaulieu; Hayit Greenspan; Burak Acar
Journal:  J Digit Imaging       Date:  2011-04       Impact factor: 4.056

4.  Automated retrieval of CT images of liver lesions on the basis of image similarity: method and preliminary results.

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Journal:  Radiology       Date:  2010-05-26       Impact factor: 11.105

5.  Measures of semantic similarity and relatedness in the biomedical domain.

Authors:  Ted Pedersen; Serguei V S Pakhomov; Siddharth Patwardhan; Christopher G Chute
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6.  RadLex: a new method for indexing online educational materials.

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7.  Comparison of ontology-based semantic-similarity measures.

Authors:  Wei-Nchih Lee; Nigam Shah; Karanjot Sundlass; Mark Musen
Journal:  AMIA Annu Symp Proc       Date:  2008-11-06

8.  iPad: Semantic annotation and markup of radiological images.

Authors:  Daniel L Rubin; Cesar Rodriguez; Priyanka Shah; Chris Beaulieu
Journal:  AMIA Annu Symp Proc       Date:  2008-11-06

9.  A hybrid system using symbolic and numeric knowledge for the semantic annotation of sulco-gyral anatomy in brain MRI images.

Authors:  Ammar Mechouche; Xavier Morandi; Christine Golbreich; Bernard Gibaud
Journal:  IEEE Trans Med Imaging       Date:  2009-07-17       Impact factor: 10.048

10.  Semantic similarity estimation in the biomedical domain: an ontology-based information-theoretic perspective.

Authors:  David Sánchez; Montserrat Batet
Journal:  J Biomed Inform       Date:  2011-04-02       Impact factor: 6.317

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  5 in total

1.  A new method for the automatic retrieval of medical cases based on the RadLex ontology.

Authors:  A B Spanier; D Cohen; L Joskowicz
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2.  A multi-level similarity measure for the retrieval of the common CT imaging signs of lung diseases.

Authors:  Ling Ma; Xiabi Liu; Baowei Fei
Journal:  Med Biol Eng Comput       Date:  2020-03-02       Impact factor: 2.602

Review 3.  Radiological images and machine learning: Trends, perspectives, and prospects.

Authors:  Zhenwei Zhang; Ervin Sejdić
Journal:  Comput Biol Med       Date:  2019-02-27       Impact factor: 4.589

4.  On combining image-based and ontological semantic dissimilarities for medical image retrieval applications.

Authors:  Camille Kurtz; Adrien Depeursinge; Sandy Napel; Christopher F Beaulieu; Daniel L Rubin
Journal:  Med Image Anal       Date:  2014-07-02       Impact factor: 8.545

5.  Dictionary Pruning with Visual Word Significance for Medical Image Retrieval.

Authors:  Fan Zhang; Yang Song; Weidong Cai; Alexander G Hauptmann; Sidong Liu; Sonia Pujol; Ron Kikinis; Michael J Fulham; David Dagan Feng; Mei Chen
Journal:  Neurocomputing       Date:  2015-11-17       Impact factor: 5.719

  5 in total

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