Literature DB >> 20836009

Models at the single cell level.

Raymond Cheong1, Saurabh Paliwal1, Andre Levchenko1,2.   

Abstract

Many cellular behaviors cannot be completely captured or appropriately described at the cell population level. Noise induced by stochastic chemical reactions, spatially polarized signaling networks, and heterogeneous cell-cell communication are among the many phenomena that require fine-grained analysis. Accordingly, the mathematical models used to describe such systems must be capable of single cell or subcellular resolution. Here, we review techniques for modeling single cells, including models of stochastic chemical kinetics, spatially heterogeneous intracellular signaling, and spatial stochastic systems. We also briefly discuss applications of each type of model.

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Year:  2010        PMID: 20836009      PMCID: PMC3895449          DOI: 10.1002/wsbm.49

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev Syst Biol Med        ISSN: 1939-005X


  132 in total

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Journal:  Eur J Biochem       Date:  2000-03

2.  A diffusion-translocation model for gradient sensing by chemotactic cells.

Authors:  M Postma; P J Van Haastert
Journal:  Biophys J       Date:  2001-09       Impact factor: 4.033

3.  Regulation of noise in the expression of a single gene.

Authors:  Ertugrul M Ozbudak; Mukund Thattai; Iren Kurtser; Alan D Grossman; Alexander van Oudenaarden
Journal:  Nat Genet       Date:  2002-04-22       Impact factor: 38.330

4.  Mechanisms of microtubule-based kinetochore positioning in the yeast metaphase spindle.

Authors:  Brian L Sprague; Chad G Pearson; Paul S Maddox; Kerry S Bloom; E D Salmon; David J Odde
Journal:  Biophys J       Date:  2003-06       Impact factor: 4.033

Review 5.  Modeling cell signaling networks.

Authors:  Narat J Eungdamrong; Ravi Iyengar
Journal:  Biol Cell       Date:  2004-06       Impact factor: 4.458

6.  Simulation of dictyostelium discoideum aggregation via reaction-diffusion model.

Authors: 
Journal:  Phys Rev Lett       Date:  1994-12-05       Impact factor: 9.161

7.  Contributions of low molecule number and chromosomal positioning to stochastic gene expression.

Authors:  Attila Becskei; Benjamin B Kaufmann; Alexander van Oudenaarden
Journal:  Nat Genet       Date:  2005-08-07       Impact factor: 38.330

8.  Phosphoinositides and Rho proteins spatially regulate actin polymerization to initiate and maintain directed movement in a one-dimensional model of a motile cell.

Authors:  Adriana T Dawes; Leah Edelstein-Keshet
Journal:  Biophys J       Date:  2006-11-10       Impact factor: 4.033

Review 9.  Specificity of receptor tyrosine kinase signaling: transient versus sustained extracellular signal-regulated kinase activation.

Authors:  C J Marshall
Journal:  Cell       Date:  1995-01-27       Impact factor: 41.582

Review 10.  Polarization of cell growth in yeast.

Authors:  D Pruyne; A Bretscher
Journal:  J Cell Sci       Date:  2000-02       Impact factor: 5.285

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  8 in total

1.  Exact and approximate distributions of protein and mRNA levels in the low-copy regime of gene expression.

Authors:  Pavol Bokes; John R King; Andrew T A Wood; Matthew Loose
Journal:  J Math Biol       Date:  2011-06-08       Impact factor: 2.259

Review 2.  Modeling of spatially-restricted intracellular signaling.

Authors:  Susana R Neves
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2011-07-15

Review 3.  Measurement and modeling of signaling at the single-cell level.

Authors:  Sarah E Kolitz; Douglas A Lauffenburger
Journal:  Biochemistry       Date:  2012-09-14       Impact factor: 3.162

4.  Noise contributions in an inducible genetic switch: a whole-cell simulation study.

Authors:  Elijah Roberts; Andrew Magis; Julio O Ortiz; Wolfgang Baumeister; Zaida Luthey-Schulten
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5.  A Nonlinear Mixed Effects Approach for Modeling the Cell-To-Cell Variability of Mig1 Dynamics in Yeast.

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Journal:  PLoS One       Date:  2015-04-20       Impact factor: 3.240

Review 6.  Strength in numbers: quantitative single-molecule RNA detection assays.

Authors:  Imre Gaspar; Anne Ephrussi
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2015-01-21       Impact factor: 5.814

7.  Systems approaches in osteoarthritis: Identifying routes to novel diagnostic and therapeutic strategies.

Authors:  Alan J Mueller; Mandy J Peffers; Carole J Proctor; Peter D Clegg
Journal:  J Orthop Res       Date:  2017-04-24       Impact factor: 3.494

8.  Computational framework for single-cell spatiotemporal dynamics of optogenetic membrane recruitment.

Authors:  Ivan A Kuznetsov; Erin E Berlew; Spencer T Glantz; Pimkhuan Hannanta-Anan; Brian Y Chow
Journal:  Cell Rep Methods       Date:  2022-07-06
  8 in total

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