Literature DB >> 21766466

Modeling of spatially-restricted intracellular signaling.

Susana R Neves1.   

Abstract

Understanding the signaling capabilities of a cell presents a major challenge, not only due to the number of molecules involved, but also because of the complex network connectivity of intracellular signaling. Recently, the proliferation of quantitative imaging techniques has led to the discovery of the vast spatial organization of intracellular signaling. Computational modeling has emerged as a powerful tool for understanding how inhomogeneous signaling originates and is maintained. This article covers the current imaging techniques used to obtain quantitative spatial data and the mathematical approaches used to model spatial cell biology. Modeling-derived hypotheses have been experimentally tested and the integration of modeling and imaging approaches has led to non-intuitive mechanistic insights.
Copyright © 2011 John Wiley & Sons, Inc.

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Year:  2011        PMID: 21766466      PMCID: PMC4108591          DOI: 10.1002/wsbm.155

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev Syst Biol Med        ISSN: 1939-005X


  88 in total

1.  Imaging dynamic redox changes in mammalian cells with green fluorescent protein indicators.

Authors:  Colette T Dooley; Timothy M Dore; George T Hanson; W Coyt Jackson; S James Remington; Roger Y Tsien
Journal:  J Biol Chem       Date:  2004-02-25       Impact factor: 5.157

Review 2.  Space in systems biology of signaling pathways--towards intracellular molecular crowding in silico.

Authors:  Kouichi Takahashi; Satya Nanda Vel Arjunan; Masaru Tomita
Journal:  FEBS Lett       Date:  2005-03-21       Impact factor: 4.124

Review 3.  Visualization of DNA methylation and histone modifications in living cells.

Authors:  Hiroshi Kimura; Yoko Hayashi-Takanaka; Kazuo Yamagata
Journal:  Curr Opin Cell Biol       Date:  2010-03-06       Impact factor: 8.382

4.  Analysis of a RanGTP-regulated gradient in mitotic somatic cells.

Authors:  Petr Kaláb; Arnd Pralle; Ehud Y Isacoff; Rebecca Heald; Karsten Weis
Journal:  Nature       Date:  2006-03-30       Impact factor: 49.962

5.  Spatio-temporal dynamics of protein kinase B/Akt signaling revealed by a genetically encoded fluorescent reporter.

Authors:  Maya T Kunkel; Qiang Ni; Roger Y Tsien; Jin Zhang; Alexandra C Newton
Journal:  J Biol Chem       Date:  2004-12-06       Impact factor: 5.157

6.  Self-organization of intracellular gradients during mitosis.

Authors:  Brian G Fuller
Journal:  Cell Div       Date:  2010-01-29       Impact factor: 5.130

7.  The lymphocyte function-associated antigen-1 receptor costimulates plasma membrane Ras via phospholipase D2.

Authors:  Adam Mor; Gabriele Campi; Guangwei Du; Yang Zheng; David A Foster; Michael L Dustin; Mark R Philips
Journal:  Nat Cell Biol       Date:  2007-05-07       Impact factor: 28.824

8.  Spatiotemporal analysis of differential Akt regulation in plasma membrane microdomains.

Authors:  Xinxin Gao; Jin Zhang
Journal:  Mol Biol Cell       Date:  2008-08-13       Impact factor: 4.138

9.  Real time analysis of tumor necrosis factor-related apoptosis-inducing ligand/cycloheximide-induced caspase activities during apoptosis initiation.

Authors:  Christian T Hellwig; Barbara F Kohler; Anna-Kaisa Lehtivarjo; Heiko Dussmann; Michael J Courtney; Jochen H M Prehn; Markus Rehm
Journal:  J Biol Chem       Date:  2008-06-03       Impact factor: 5.157

10.  A genetically encoded calcium indicator for chronic in vivo two-photon imaging.

Authors:  Marco Mank; Alexandre Ferrão Santos; Stephan Direnberger; Thomas D Mrsic-Flogel; Sonja B Hofer; Valentin Stein; Thomas Hendel; Dierk F Reiff; Christiaan Levelt; Alexander Borst; Tobias Bonhoeffer; Mark Hübener; Oliver Griesbeck
Journal:  Nat Methods       Date:  2008-09       Impact factor: 28.547

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  2 in total

Review 1.  Molecular mechanisms underlying neuronal synaptic plasticity: systems biology meets computational neuroscience in the wilds of synaptic plasticity.

Authors:  Kim T Blackwell; Joanna Jedrzejewska-Szmek
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2013-09-09

Review 2.  Visualization of cyclic nucleotide dynamics in neurons.

Authors:  Kirill Gorshkov; Jin Zhang
Journal:  Front Cell Neurosci       Date:  2014-12-04       Impact factor: 5.505

  2 in total

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