Literature DB >> 20833805

Genome sequence of the dioxin-mineralizing bacterium Sphingomonas wittichii RW1.

Todd R Miller1, Arthur L Delcher, Steven L Salzberg, Elizabeth Saunders, John C Detter, Rolf U Halden.   

Abstract

Pollutants such as polychlorinated biphenyls and dioxins pose a serious threat to human and environmental health. Natural attenuation of these compounds by microorganisms provides one promising avenue for their removal from contaminated areas. Over the past 2 decades, studies of the bacterium Sphingomonas wittichii RW1 have provided a wealth of knowledge about how bacteria metabolize chlorinated aromatic hydrocarbons. Here we describe the finished genome sequence of S. wittichii RW1 and major findings from its annotation.

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Year:  2010        PMID: 20833805      PMCID: PMC2976435          DOI: 10.1128/JB.01030-10

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  9 in total

1.  Identification and phenotypic characterization of Sphingomonas wittichii strain RW1 by peptide mass fingerprinting using matrix-assisted laser desorption ionization-time of flight mass spectrometry.

Authors:  Rolf U Halden; David R Colquhoun; Eric S Wisniewski
Journal:  Appl Environ Microbiol       Date:  2005-05       Impact factor: 4.792

2.  Metabolism of dibenzo-p-dioxin by Sphingomonas sp. strain RW1.

Authors:  R M Wittich; H Wilkes; V Sinnwell; W Francke; P Fortnagel
Journal:  Appl Environ Microbiol       Date:  1992-03       Impact factor: 4.792

3.  Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

Authors:  B Ewing; L Hillier; M C Wendl; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

4.  Base-calling of automated sequencer traces using phred. II. Error probabilities.

Authors:  B Ewing; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

5.  A whole-genome assembly of Drosophila.

Authors:  E W Myers; G G Sutton; A L Delcher; I M Dew; D P Fasulo; M J Flanigan; S A Kravitz; C M Mobarry; K H Reinert; K A Remington; E L Anson; R A Bolanos; H H Chou; C M Jordan; A L Halpern; S Lonardi; E M Beasley; R C Brandon; L Chen; P J Dunn; Z Lai; Y Liang; D R Nusskern; M Zhan; Q Zhang; X Zheng; G M Rubin; M D Adams; J C Venter
Journal:  Science       Date:  2000-03-24       Impact factor: 47.728

6.  Degradation of Chlorinated Dibenzofurans and Dibenzo-p-Dioxins by Sphingomonas sp. Strain RW1.

Authors:  H Wilkes; R Wittich; K N Timmis; P Fortnagel; W Francke
Journal:  Appl Environ Microbiol       Date:  1996-02       Impact factor: 4.792

7.  Genetic analysis of dioxin dioxygenase of Sphingomonas sp. Strain RW1: catabolic genes dispersed on the genome.

Authors:  J Armengaud; B Happe; K N Timmis
Journal:  J Bacteriol       Date:  1998-08       Impact factor: 3.490

8.  Biotransformation of 2,7-dichloro- and 1,2,3,4-tetrachlorodibenzo-p-dioxin by Sphingomonas wittichii RW1.

Authors:  Hyo-Bong Hong; Yoon-Seok Chang; In-Hyun Nam; Peter Fortnagel; Stefan Schmidt
Journal:  Appl Environ Microbiol       Date:  2002-05       Impact factor: 4.792

9.  Plant carbohydrate scavenging through tonB-dependent receptors: a feature shared by phytopathogenic and aquatic bacteria.

Authors:  Servane Blanvillain; Damien Meyer; Alice Boulanger; Martine Lautier; Catherine Guynet; Nicolas Denancé; Jacques Vasse; Emmanuelle Lauber; Matthieu Arlat
Journal:  PLoS One       Date:  2007-02-21       Impact factor: 3.240

  9 in total
  32 in total

1.  Genome sequence of Sphingomonas sp. S17, isolated from an alkaline, hyperarsenic, and hypersaline volcano-associated lake at high altitude in the Argentinean Puna.

Authors:  Maria Eugenia Farias; Santiago Revale; Estefania Mancini; Omar Ordoñez; Adrian Turjanski; Néstor Cortez; Martin P Vazquez
Journal:  J Bacteriol       Date:  2011-05-20       Impact factor: 3.490

2.  Characterization of Sphingomonas sp. JB13 exo-inulinase: a novel detergent-, salt-, and protease-tolerant exo-inulinase.

Authors:  Junpei Zhou; Mozhen Peng; Rui Zhang; Junjun Li; Xianghua Tang; Bo Xu; Junmei Ding; Yajie Gao; Junrong Ren; Zunxi Huang
Journal:  Extremophiles       Date:  2015-01-10       Impact factor: 2.395

3.  Letting go: bacterial genome reduction solves the dilemma of adapting to predation mortality in a substrate-restricted environment.

Authors:  Michael Baumgartner; Stefan Roffler; Thomas Wicker; Jakob Pernthaler
Journal:  ISME J       Date:  2017-06-06       Impact factor: 10.302

4.  Genome sequence of Sphingobium indicum B90A, a hexachlorocyclohexane-degrading bacterium.

Authors:  Shailly Anand; Naseer Sangwan; Pushp Lata; Jasvinder Kaur; Ankita Dua; Amit Kumar Singh; Mansi Verma; Jaspreet Kaur; Jitendra P Khurana; Paramjit Khurana; Saloni Mathur; Rup Lal
Journal:  J Bacteriol       Date:  2012-08       Impact factor: 3.490

5.  Genome sequence of Sphingomonas wittichii DP58, the first reported phenazine-1-carboxylic acid-degrading strain.

Authors:  Zhiwei Ma; Xuemei Shen; Hongbo Hu; Wei Wang; Huasong Peng; Ping Xu; Xuehong Zhang
Journal:  J Bacteriol       Date:  2012-07       Impact factor: 3.490

6.  Cloning, expression and characterization of a halotolerant esterase from a marine bacterium Pelagibacterium halotolerans B2T.

Authors:  Xiawei Jiang; Yingyi Huo; Hong Cheng; Xinqi Zhang; Xufen Zhu; Min Wu
Journal:  Extremophiles       Date:  2012-04-06       Impact factor: 2.395

7.  Three-Component O-Demethylase System Essential for Catabolism of a Lignin-Derived Biphenyl Compound in Sphingobium sp. Strain SYK-6.

Authors:  Taichi Yoshikata; Kazuya Suzuki; Naofumi Kamimura; Masahiro Namiki; Shojiro Hishiyama; Takuma Araki; Daisuke Kasai; Yuichiro Otsuka; Masaya Nakamura; Masao Fukuda; Yoshihiro Katayama; Eiji Masai
Journal:  Appl Environ Microbiol       Date:  2014-09-12       Impact factor: 4.792

8.  Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities.

Authors:  Frank O Aylward; Bradon R McDonald; Sandra M Adams; Alejandra Valenzuela; Rebeccah A Schmidt; Lynne A Goodwin; Tanja Woyke; Cameron R Currie; Garret Suen; Michael Poulsen
Journal:  Appl Environ Microbiol       Date:  2013-04-05       Impact factor: 4.792

9.  Two bacterial glycosphingolipid synthases responsible for the synthesis of glucuronosylceramide and α-galactosylceramide.

Authors:  Nozomu Okino; Mengbai Li; Qingjun Qu; Tomoko Nakagawa; Yasuhiro Hayashi; Mitsufumi Matsumoto; Yohei Ishibashi; Makoto Ito
Journal:  J Biol Chem       Date:  2020-06-09       Impact factor: 5.157

10.  Swit_4259, an acetoacetate decarboxylase-like enzyme from Sphingomonas wittichii RW1.

Authors:  Lisa S Mydy; Zahra Mashhadi; T William Knight; Tyler Fenske; Trevor Hagemann; Robert W Hoppe; Lanlan Han; Todd R Miller; Alan W Schwabacher; Nicholas R Silvaggi
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2017-11-14       Impact factor: 1.056

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