Literature DB >> 22689229

Genome sequence of Sphingomonas wittichii DP58, the first reported phenazine-1-carboxylic acid-degrading strain.

Zhiwei Ma1, Xuemei Shen, Hongbo Hu, Wei Wang, Huasong Peng, Ping Xu, Xuehong Zhang.   

Abstract

Sphingomonas wittichii DP58 (CCTCC M 2012027), the first reported phenazine-1-carboxylic acid (PCA)-degrading strain, was isolated from pimiento rhizosphere soils. Here we present a 5.6-Mb assembly of its genome. This sequence would contribute to the elucidation of the molecular mechanism of PCA degradation to improve the antifungal's effectiveness or remove superfluous PCA.

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Year:  2012        PMID： 22689229      PMCID： PMC3434718          DOI： 10.1128/JB.00330-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  20 in total

1.  A novel bacterial ATP-binding cassette transporter system that allows uptake of macromolecules.

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2.  Optimized multiplex PCR: efficiently closing a whole-genome shotgun sequencing project.

Authors:  H Tettelin; D Radune; S Kasif; H Khouri; S L Salzberg
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Review 3.  Molecular characteristics of xenobiotic-degrading sphingomonads.

Authors:  Andreas Stolz
Journal:  Appl Microbiol Biotechnol       Date:  2008-11-11       Impact factor: 4.813

4.  Genome sequence of the dioxin-mineralizing bacterium Sphingomonas wittichii RW1.

Authors:  Todd R Miller; Arthur L Delcher; Steven L Salzberg; Elizabeth Saunders; John C Detter; Rolf U Halden
Journal:  J Bacteriol       Date:  2010-09-10       Impact factor: 3.490

5.  mGenomeSubtractor: a web-based tool for parallel in silico subtractive hybridization analysis of multiple bacterial genomes.

Authors:  Yucheng Shao; Xinyi He; Ewan M Harrison; Cui Tai; Hong-Yu Ou; Kumar Rajakumar; Zixin Deng
Journal:  Nucleic Acids Res       Date:  2010-04-30       Impact factor: 16.971

6.  Microbial transformation of benzothiophenes, with carbazole as the auxiliary substrate, by Sphingomonas sp. strain XLDN2-5.

Authors:  Zhonghui Gai; Bo Yu; Xiaoyu Wang; Zixin Deng; Ping Xu
Journal:  Microbiology       Date:  2008-12       Impact factor: 2.777

7.  Metabolic degradation of phenazine-1-carboxylic acid by the strain Sphingomonas sp. DP58: the identification of two metabolites.

Authors:  Kuaikuai Chen; Hongbo Hu; Wei Wang; Xuehong Zhang; Yuquan Xu
Journal:  Biodegradation       Date:  2007-12-21       Impact factor: 3.909

8.  Isolation, identification, and degradation characteristics of phenazine-1-carboxylic acid-degrading strain Sphingomonas sp. DP58.

Authors:  Zhi-Jian Yang; Wei Wang; Ying Jin; Hong-Bo Hu; Xue-Hong Zhang; Yu-Quan Xu
Journal:  Curr Microbiol       Date:  2007-08-13       Impact factor: 2.188

9.  NCBI Reference Sequences: current status, policy and new initiatives.

Authors:  Kim D Pruitt; Tatiana Tatusova; William Klimke; Donna R Maglott
Journal:  Nucleic Acids Res       Date:  2008-10-16       Impact factor: 16.971

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
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  6 in total

1.  Novel Three-Component Phenazine-1-Carboxylic Acid 1,2-Dioxygenase in Sphingomonas wittichii DP58.

Authors:  Qiang Zhao; Hong-Bo Hu; Wei Wang; Xian-Qing Huang; Xue-Hong Zhang
Journal:  Appl Environ Microbiol       Date:  2017-04-17       Impact factor: 4.792

2.  Microbial diversity and metaproteomic analysis of activated sludge responses to naphthalene and anthracene exposure.

Authors:  Shanshan Li; Shaoda Hu; Sanyuan Shi; Lu Ren; Wei Yan; Huabing Zhao
Journal:  RSC Adv       Date:  2019-07-24       Impact factor: 4.036

3.  PhdA Catalyzes the First Step of Phenazine-1-Carboxylic Acid Degradation in Mycobacterium fortuitum.

Authors:  Kyle C Costa; Leon S Moskatel; Lucas A Meirelles; Dianne K Newman
Journal:  J Bacteriol       Date:  2018-04-24       Impact factor: 3.490

4.  Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities.

Authors:  Frank O Aylward; Bradon R McDonald; Sandra M Adams; Alejandra Valenzuela; Rebeccah A Schmidt; Lynne A Goodwin; Tanja Woyke; Cameron R Currie; Garret Suen; Michael Poulsen
Journal:  Appl Environ Microbiol       Date:  2013-04-05       Impact factor: 4.792

5.  Draft Genome Sequence of Triclosan-Degrading Bacterium Sphingomonas sp. Strain YL-JM2C, Isolated from a Wastewater Treatment Plant in China.

Authors:  Sikandar I Mulla; Anyi Hu; Haili Xu; Chang-Ping Yu
Journal:  Genome Announc       Date:  2015-06-04

6.  Enzymatic Degradation of Phenazines Can Generate Energy and Protect Sensitive Organisms from Toxicity.

Authors:  Kyle C Costa; Megan Bergkessel; Scott Saunders; Jonas Korlach; Dianne K Newman
Journal:  mBio       Date:  2015-10-27       Impact factor: 7.867
  6 in total

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