Literature DB >> 20832333

Epigenetic control of recombination in the immune system.

Yehudit Bergman1, Howard Cedar.   

Abstract

Immune receptor gene expression is regulated by a series of developmental events that modify their accessibility in a locus, cell type, stage and allele-specific manner. This is carried out by a programmed combination of many different molecular mechanisms, including region-wide replication timing, changes in nuclear localization, chromatin contraction, histone modification, nucleosome positioning and DNA methylation. These modalities ultimately work by controlling steric interactions between receptor loci and the recombination machinery.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20832333      PMCID: PMC2981633          DOI: 10.1016/j.smim.2010.07.003

Source DB:  PubMed          Journal:  Semin Immunol        ISSN: 1044-5323            Impact factor:   11.130


  105 in total

1.  Essential roles of the kappa light chain intronic enhancer and 3' enhancer in kappa rearrangement and demethylation.

Authors:  Matthew Inlay; Frederick W Alt; David Baltimore; Yang Xu
Journal:  Nat Immunol       Date:  2002-04-22       Impact factor: 25.606

2.  Differential accessibility at the kappa chain locus plays a role in allelic exclusion.

Authors:  Maya Goldmit; Mark Schlissel; Howard Cedar; Yehudit Bergman
Journal:  EMBO J       Date:  2002-10-01       Impact factor: 11.598

3.  The mouse immunoglobulin heavy chain V-D intergenic sequence contains insulators that may regulate ordered V(D)J recombination.

Authors:  Karen Featherstone; Andrew L Wood; Adam J Bowen; Anne E Corcoran
Journal:  J Biol Chem       Date:  2010-01-25       Impact factor: 5.157

4.  Compound haploinsufficiencies of Ebf1 and Runx1 genes impede B cell lineage progression.

Authors:  Kara Lukin; Scott Fields; Desiree Lopez; Marie Cherrier; Kristina Ternyak; Julita Ramírez; Ann J Feeney; James Hagman
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-12       Impact factor: 11.205

5.  The in vivo pattern of binding of RAG1 and RAG2 to antigen receptor loci.

Authors:  Yanhong Ji; Wolfgang Resch; Elizabeth Corbett; Arito Yamane; Rafael Casellas; David G Schatz
Journal:  Cell       Date:  2010-04-15       Impact factor: 41.582

6.  Stepwise activation of the immunoglobulin mu heavy chain gene locus.

Authors:  D Chowdhury; R Sen
Journal:  EMBO J       Date:  2001-11-15       Impact factor: 11.598

7.  A large fraction of extragenic RNA pol II transcription sites overlap enhancers.

Authors:  Francesca De Santa; Iros Barozzi; Flore Mietton; Serena Ghisletti; Sara Polletti; Betsabeh Khoramian Tusi; Heiko Muller; Jiannis Ragoussis; Chia-Lin Wei; Gioacchino Natoli
Journal:  PLoS Biol       Date:  2010-05-11       Impact factor: 8.029

8.  CpG islands influence chromatin structure via the CpG-binding protein Cfp1.

Authors:  John P Thomson; Peter J Skene; Jim Selfridge; Thomas Clouaire; Jacky Guy; Shaun Webb; Alastair R W Kerr; Aimée Deaton; Rob Andrews; Keith D James; Daniel J Turner; Robert Illingworth; Adrian Bird
Journal:  Nature       Date:  2010-04-15       Impact factor: 49.962

9.  CpG islands recruit a histone H3 lysine 36 demethylase.

Authors:  Neil P Blackledge; Jin C Zhou; Michael Y Tolstorukov; Anca M Farcas; Peter J Park; Robert J Klose
Journal:  Mol Cell       Date:  2010-04-23       Impact factor: 17.970

10.  Widespread transcription at neuronal activity-regulated enhancers.

Authors:  Tae-Kyung Kim; Martin Hemberg; Jesse M Gray; Allen M Costa; Daniel M Bear; Jing Wu; David A Harmin; Mike Laptewicz; Kellie Barbara-Haley; Scott Kuersten; Eirene Markenscoff-Papadimitriou; Dietmar Kuhl; Haruhiko Bito; Paul F Worley; Gabriel Kreiman; Michael E Greenberg
Journal:  Nature       Date:  2010-04-14       Impact factor: 49.962

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  14 in total

1.  To κ(+) B or not to κ(+) B.

Authors:  Megan R Fisher; Craig H Bassing
Journal:  Nat Immunol       Date:  2015-10       Impact factor: 25.606

Review 2.  Epigenetics of haematopoietic cell development.

Authors:  Howard Cedar; Yehudit Bergman
Journal:  Nat Rev Immunol       Date:  2011-06-10       Impact factor: 53.106

3.  Epigenetic modifications of the VH region after DJH recombination in Pro-B cells.

Authors:  Yanying Dong; Caijun Wu; Xiaohui Zhao; Ping Zhang; Hua Zhang; Mingzhe Zheng; Shichang Li; Junna Jiao; Xiaozhuo Yu; Zhuangwei Lv; Yanhong Ji
Journal:  Immunology       Date:  2017-06-23       Impact factor: 7.397

Review 4.  Acute lymphoblastic leukemia and developmental biology: a crucial interrelationship.

Authors:  Elena Campos-Sanchez; Amparo Toboso-Navasa; Isabel Romero-Camarero; Marcos Barajas-Diego; Isidro Sanchez-García; César Cobaleda
Journal:  Cell Cycle       Date:  2011-10-15       Impact factor: 4.534

5.  Complete cis Exclusion upon Duplication of the Eμ Enhancer at the Immunoglobulin Heavy Chain Locus.

Authors:  Nadine Puget; Claire Leduc; Zéliha Oruc; Mohammed Moutahir; Marc Le Bert; Ahmed Amine Khamlichi
Journal:  Mol Cell Biol       Date:  2015-07       Impact factor: 4.272

Review 6.  Dissecting Epigenetic Dysregulation of Primary Antibody Deficiencies.

Authors:  Virginia C Rodríguez-Cortez; Lucia Del Pino-Molina; Javier Rodríguez-Ubreva; Eduardo López-Granados; Esteban Ballestar
Journal:  J Clin Immunol       Date:  2016-03-17       Impact factor: 8.317

Review 7.  Transcription and recombination factories: common features?

Authors:  Joseph S Lucas; Claudia Bossen; Cornelis Murre
Journal:  Curr Opin Cell Biol       Date:  2010-12-17       Impact factor: 8.382

8.  Regulated large-scale nucleosome density patterns and precise nucleosome positioning correlate with V(D)J recombination.

Authors:  Sandhya R Pulivarthy; Mattia Lion; Guray Kuzu; Adam G W Matthews; Mark L Borowsky; John Morris; Robert E Kingston; Jonathan H Dennis; Michael Y Tolstorukov; Marjorie A Oettinger
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-03       Impact factor: 11.205

Review 9.  Epigenetic mechanisms and models in the origins of asthma.

Authors:  Wilfried Karmaus; Ali H Ziyab; Todd Everson; John W Holloway
Journal:  Curr Opin Allergy Clin Immunol       Date:  2013-02

10.  Discovering and mapping chromatin states using a tree hidden Markov model.

Authors:  Jacob Biesinger; Yuanfeng Wang; Xiaohui Xie
Journal:  BMC Bioinformatics       Date:  2013-04-10       Impact factor: 3.169

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