Literature DB >> 11707410

Stepwise activation of the immunoglobulin mu heavy chain gene locus.

D Chowdhury1, R Sen.   

Abstract

The immunoglobulin heavy chain (IgH) gene locus spans several megabases. We show that IgH activation during B-cell differentiation, as measured by histone acetylation, occurs in discrete, independently regulated domains. Initially, a 120 kb domain of germline DNA is hyperacetylated, that extends from D(FL16.1), the 5'-most D(H) gene segment, to the intergenic region between Cmu and Cdelta. Germline V(H) genes were not hyperacetylated at this stage, which accounts for D(H) to J(H) recombination occurring first during B-cell development. Subsequent activation of the V(H) locus happens in at least three differentially regulated domains: an interleukin-7-regulated domain consisting of the 5' J558 family, an intermediate domain and the 3' V(H) genes, which are hyperacetylated in response to DJ(H) recombination. These observations lead to mechanisms for two well-documented phenomena in B-cell ontogeny: the sequential rearrangement of D(H) followed by V(H) gene segments, and the preferential recombination of D(H)-proximal V(H) genes in pro-B cells. We suggest that stepwise activation may be a general mechanism by which large segments of the genome are prepared for expression.

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Year:  2001        PMID: 11707410      PMCID: PMC125735          DOI: 10.1093/emboj/20.22.6394

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  56 in total

1.  A survey of protein-DNA interaction sites within the murine immunoglobulin heavy chain locus reveals a particularly complex pattern around the DQ52 element.

Authors:  A H Kottmann; C Brack; H Eibel; G Köhler
Journal:  Eur J Immunol       Date:  1992-08       Impact factor: 5.532

2.  A V(D)J recombinase-inducible B-cell line: role of transcriptional enhancer elements in directing V(D)J recombination.

Authors:  E M Oltz; F W Alt; W C Lin; J Chen; G Taccioli; S Desiderio; G Rathbun
Journal:  Mol Cell Biol       Date:  1993-10       Impact factor: 4.272

3.  Virus infection leads to localized hyperacetylation of histones H3 and H4 at the IFN-beta promoter.

Authors:  B S Parekh; T Maniatis
Journal:  Mol Cell       Date:  1999-01       Impact factor: 17.970

4.  Transcriptional silencing in yeast is associated with reduced nucleosome acetylation.

Authors:  M Braunstein; A B Rose; S G Holmes; C D Allis; J R Broach
Journal:  Genes Dev       Date:  1993-04       Impact factor: 11.361

5.  Biased expression of JH-proximal VH genes occurs in the newly generated repertoire of neonatal and adult mice.

Authors:  B A Malynn; G D Yancopoulos; J E Barth; C A Bona; F W Alt
Journal:  J Exp Med       Date:  1990-03-01       Impact factor: 14.307

6.  TCR beta and TCR alpha gene enhancers confer tissue- and stage-specificity on V(D)J recombination events.

Authors:  M Capone; F Watrin; C Fernex; B Horvat; B Krippl; L Wu; R Scollay; P Ferrier
Journal:  EMBO J       Date:  1993-11       Impact factor: 11.598

7.  Mutations of the intronic IgH enhancer and its flanking sequences differentially affect accessibility of the JH locus.

Authors:  J Chen; F Young; A Bottaro; V Stewart; R K Smith; F W Alt
Journal:  EMBO J       Date:  1993-12       Impact factor: 11.598

8.  V(D)J recombination in B cells is impaired but not blocked by targeted deletion of the immunoglobulin heavy chain intron enhancer.

Authors:  M Serwe; F Sablitzky
Journal:  EMBO J       Date:  1993-06       Impact factor: 11.598

9.  Resolution and characterization of pro-B and pre-pro-B cell stages in normal mouse bone marrow.

Authors:  R R Hardy; C E Carmack; S A Shinton; J D Kemp; K Hayakawa
Journal:  J Exp Med       Date:  1991-05-01       Impact factor: 14.307

10.  Functional GATA-3 binding sites within murine CD8 alpha upstream regulatory sequences.

Authors:  D B Landry; J D Engel; R Sen
Journal:  J Exp Med       Date:  1993-09-01       Impact factor: 14.307

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  66 in total

1.  The genomic arrangement of T cell receptor variable genes is a determinant of the developmental rearrangement pattern.

Authors:  Na Xiong; Jeanne E Baker; Chulho Kang; David H Raulet
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-22       Impact factor: 11.205

2.  Regulation of V(D)J recombination: a dominant role for promoter positioning in gene segment accessibility.

Authors:  Michael L Sikes; Amber Meade; Rajkamal Tripathi; Michael S Krangel; Eugene M Oltz
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-26       Impact factor: 11.205

3.  Differential accessibility at the kappa chain locus plays a role in allelic exclusion.

Authors:  Maya Goldmit; Mark Schlissel; Howard Cedar; Yehudit Bergman
Journal:  EMBO J       Date:  2002-10-01       Impact factor: 11.598

4.  Changes in histone acetylation are associated with differences in accessibility of V(H) gene segments to V-DJ recombination during B-cell ontogeny and development.

Authors:  Kristen Johnson; Cristina Angelin-Duclos; Sinae Park; Kathryn L Calame
Journal:  Mol Cell Biol       Date:  2003-04       Impact factor: 4.272

5.  B cell-specific loss of histone 3 lysine 9 methylation in the V(H) locus depends on Pax5.

Authors:  Kristen Johnson; David L Pflugh; Duonan Yu; David G T Hesslein; Kuo-I Lin; Alfred L M Bothwell; Andrei Thomas-Tikhonenko; David G Schatz; Kathryn Calame
Journal:  Nat Immunol       Date:  2004-07-18       Impact factor: 25.606

6.  Mechanistic basis for RAG discrimination between recombination sites and the off-target sites of human lymphomas.

Authors:  Noriko Shimazaki; Amjad Askary; Patrick C Swanson; Michael R Lieber
Journal:  Mol Cell Biol       Date:  2011-11-07       Impact factor: 4.272

7.  Differential regulation of histone acetylation and generation of mutations in switch regions is associated with Ig class switching.

Authors:  Ziqiang Li; Zhonghui Luo; Matthew D Scharff
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-14       Impact factor: 11.205

8.  Chromatin accessibility and epigenetic modifications differ between frequently and infrequently rearranging VH genes.

Authors:  Celia R Espinoza; Ann J Feeney
Journal:  Mol Immunol       Date:  2007-01-10       Impact factor: 4.407

9.  Transcription of a productively rearranged Ig VDJC alpha does not require the presence of HS4 in the IgH 3' regulatory region.

Authors:  Buyi Zhang; Adrienne Alaie-Petrillo; Maria Kon; Fubin Li; Laurel A Eckhardt
Journal:  J Immunol       Date:  2007-05-15       Impact factor: 5.422

10.  Reciprocal patterns of methylation of H3K36 and H3K27 on proximal vs. distal IgVH genes are modulated by IL-7 and Pax5.

Authors:  Cheng-Ran Xu; Lana Schaffer; Steven R Head; Ann J Feeney
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-17       Impact factor: 11.205

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