Literature DB >> 20828621

The elusive π-helix.

R Peter Riek1, Robert M Graham.   

Abstract

Central to protein architecture is the local arrangement or secondary structure of the polypeptide backbone. Thirty to forty percent of protein domains are α-helices with 3.6 residues per turn. π-Helices, in which the peptide chain is more loosely coiled (4.4 residues per turn), have also been proposed. However, such structures necessitate an energetically unfavorable ∼1Å central helical hole. We show that rather than being composed of idealized π-helices, helical regions formed from putative π-helices actually consist of a series of concatenated wide turns with unique elliptical configurations. These structures have a larger helical radius akin to that of a π-helix, but without the loss of favorable cross-core van der Waals interactions. This not only obviates the helical void, but also endows proteins with important functionalities, including metal ion coordination, enhanced flexibility and specific enzyme-substrate binding interactions. Crown
Copyright © 2010. Published by Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20828621     DOI: 10.1016/j.jsb.2010.09.001

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  12 in total

1.  Crystal structures of substrate-free and nitrosyl cytochrome P450cin: implications for O(2) activation.

Authors:  Yarrow Madrona; Sarvind Tripathi; Huiying Li; Thomas L Poulos
Journal:  Biochemistry       Date:  2012-08-07       Impact factor: 3.162

2.  Geometry motivated alternative view on local protein backbone structures.

Authors:  Jan Zacharias; Ernst Walter Knapp
Journal:  Protein Sci       Date:  2013-09-30       Impact factor: 6.725

3.  Theory of the origin, evolution, and nature of life.

Authors:  Erik D Andrulis
Journal:  Life (Basel)       Date:  2011-12-23

4.  Early events in helix unfolding under external forces: a milestoning analysis.

Authors:  Steven M Kreuzer; Ron Elber; Tess J Moon
Journal:  J Phys Chem B       Date:  2012-05-29       Impact factor: 2.991

5.  Deoxycholate-Enhanced Shigella Virulence Is Regulated by a Rare π-Helix in the Type Three Secretion System Tip Protein IpaD.

Authors:  Abram R Bernard; T Carson Jessop; Prashant Kumar; Nicholas E Dickenson
Journal:  Biochemistry       Date:  2017-11-22       Impact factor: 3.162

Review 6.  The role of π-helices in TRP channel gating.

Authors:  Lejla Zubcevic; Seok-Yong Lee
Journal:  Curr Opin Struct Biol       Date:  2019-08-02       Impact factor: 6.809

7.  Structural Studies of the Methylosinus trichosporium OB3b Soluble Methane Monooxygenase Hydroxylase and Regulatory Component Complex Reveal a Transient Substrate Tunnel.

Authors:  Jason C Jones; Rahul Banerjee; Ke Shi; Hideki Aihara; John D Lipscomb
Journal:  Biochemistry       Date:  2020-07-30       Impact factor: 3.162

8.  Combining theoretical and experimental data to decipher CFTR 3D structures and functions.

Authors:  Brice Hoffmann; Ahmad Elbahnsi; Pierre Lehn; Jean-Luc Décout; Fabio Pietrucci; Jean-Paul Mornon; Isabelle Callebaut
Journal:  Cell Mol Life Sci       Date:  2018-05-19       Impact factor: 9.261

9.  Ferrochelatase π-helix: Implications from examining the role of the conserved π-helix glutamates in porphyrin metalation and product release.

Authors:  Mallory E Gillam; Gregory A Hunter; Gloria C Ferreira
Journal:  Arch Biochem Biophys       Date:  2018-02-23       Impact factor: 4.013

10.  Full-open and closed CFTR channels, with lateral tunnels from the cytoplasm and an alternative position of the F508 region, as revealed by molecular dynamics.

Authors:  Jean-Paul Mornon; Brice Hoffmann; Slavica Jonic; Pierre Lehn; Isabelle Callebaut
Journal:  Cell Mol Life Sci       Date:  2014-10-07       Impact factor: 9.261

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