| Literature DB >> 20828621 |
R Peter Riek1, Robert M Graham.
Abstract
Central to protein architecture is the local arrangement or secondary structure of the polypeptide backbone. Thirty to forty percent of protein domains are α-helices with 3.6 residues per turn. π-Helices, in which the peptide chain is more loosely coiled (4.4 residues per turn), have also been proposed. However, such structures necessitate an energetically unfavorable ∼1Å central helical hole. We show that rather than being composed of idealized π-helices, helical regions formed from putative π-helices actually consist of a series of concatenated wide turns with unique elliptical configurations. These structures have a larger helical radius akin to that of a π-helix, but without the loss of favorable cross-core van der Waals interactions. This not only obviates the helical void, but also endows proteins with important functionalities, including metal ion coordination, enhanced flexibility and specific enzyme-substrate binding interactions. CrownEntities:
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Year: 2010 PMID: 20828621 DOI: 10.1016/j.jsb.2010.09.001
Source DB: PubMed Journal: J Struct Biol ISSN: 1047-8477 Impact factor: 2.867