Literature DB >> 29779042

Combining theoretical and experimental data to decipher CFTR 3D structures and functions.

Brice Hoffmann1,2, Ahmad Elbahnsi1, Pierre Lehn3, Jean-Luc Décout4, Fabio Pietrucci1, Jean-Paul Mornon5, Isabelle Callebaut1.   

Abstract

Cryo-electron microscopy (cryo-EM) has recently provided invaluable experimental data about the full-length cystic fibrosis transmembrane conductance regulator (CFTR) 3D structure. However, this experimental information deals with inactive states of the channel, either in an apo, quiescent conformation, in which nucleotide-binding domains (NBDs) are widely separated or in an ATP-bound, yet closed conformation. Here, we show that 3D structure models of the open and closed forms of the channel, now further supported by metadynamics simulations and by comparison with the cryo-EM data, could be used to gain some insights into critical features of the conformational transition toward active CFTR forms. These critical elements lie within membrane-spanning domains but also within NBD1 and the N-terminal extension, in which conformational plasticity is predicted to occur to help the interaction with filamin, one of the CFTR cellular partners.

Entities:  

Keywords:  ABC exporter; CFTR; Comparative modeling; Cryo-electron microscopy; Filamin; Metadynamics

Mesh:

Substances:

Year:  2018        PMID: 29779042     DOI: 10.1007/s00018-018-2835-7

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  90 in total

1.  Escaping free-energy minima.

Authors:  Alessandro Laio; Michele Parrinello
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-23       Impact factor: 11.205

2.  CHARMM-GUI: a web-based graphical user interface for CHARMM.

Authors:  Sunhwan Jo; Taehoon Kim; Vidyashankara G Iyer; Wonpil Im
Journal:  J Comput Chem       Date:  2008-08       Impact factor: 3.376

3.  A novel structural unit in the N-terminal region of filamins.

Authors:  Ritika Sethi; Jonne Seppälä; Helena Tossavainen; Mikko Ylilauri; Salla Ruskamo; Olli T Pentikäinen; Ulla Pentikäinen; Perttu Permi; Jari Ylänne
Journal:  J Biol Chem       Date:  2014-01-27       Impact factor: 5.157

Review 4.  The filamins: organizers of cell structure and function.

Authors:  Fumihiko Nakamura; Thomas P Stossel; John H Hartwig
Journal:  Cell Adh Migr       Date:  2011-03-01       Impact factor: 3.405

5.  The evolution of filamin-a protein domain repeat perspective.

Authors:  Sara Light; Rauan Sagit; Sujay S Ithychanda; Jun Qin; Arne Elofsson
Journal:  J Struct Biol       Date:  2012-03-10       Impact factor: 2.867

6.  Localizing a gate in CFTR.

Authors:  Xiaolong Gao; Tzyh-Chang Hwang
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-09       Impact factor: 11.205

Review 7.  Molecular modelling and molecular dynamics of CFTR.

Authors:  Isabelle Callebaut; Brice Hoffmann; Pierre Lehn; Jean-Paul Mornon
Journal:  Cell Mol Life Sci       Date:  2016-10-07       Impact factor: 9.261

8.  Full-open and closed CFTR channels, with lateral tunnels from the cytoplasm and an alternative position of the F508 region, as revealed by molecular dynamics.

Authors:  Jean-Paul Mornon; Brice Hoffmann; Slavica Jonic; Pierre Lehn; Isabelle Callebaut
Journal:  Cell Mol Life Sci       Date:  2014-10-07       Impact factor: 9.261

9.  On the mechanism of gating defects caused by the R117H mutation in cystic fibrosis transmembrane conductance regulator.

Authors:  Ying-Chun Yu; Yoshiro Sohma; Tzyh-Chang Hwang
Journal:  J Physiol       Date:  2016-03-23       Impact factor: 5.182

10.  Transmembrane helical interactions in the CFTR channel pore.

Authors:  Jhuma Das; Andrei A Aleksandrov; Liying Cui; Lihua He; John R Riordan; Nikolay V Dokholyan
Journal:  PLoS Comput Biol       Date:  2017-06-22       Impact factor: 4.475

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  6 in total

Review 1.  Molecular mechanisms of cystic fibrosis - how mutations lead to misfunction and guide therapy.

Authors:  Carlos M Farinha; Isabelle Callebaut
Journal:  Biosci Rep       Date:  2022-07-29       Impact factor: 3.976

2.  The CFTR P67L variant reveals a key role for N-terminal lasso helices in channel folding, maturation, and pharmacologic rescue.

Authors:  Carleen Mae Sabusap; Disha Joshi; Luba Simhaev; Kathryn E Oliver; Hanoch Senderowitz; Marcel van Willigen; Ineke Braakman; Andras Rab; Eric J Sorscher; Jeong S Hong
Journal:  J Biol Chem       Date:  2021-03-26       Impact factor: 5.486

3.  New insights into structure and function of bis-phosphinic acid derivatives and implications for CFTR modulation.

Authors:  Sara Bitam; Ahmad Elbahnsi; Geordie Creste; Iwona Pranke; Benoit Chevalier; Farouk Berhal; Isabelle Callebaut; Christine Gravier-Pelletier; Isabelle Sermet-Gaudelus; Brice Hoffmann; Nathalie Servel; Danielle Tondelier; Aurelie Hatton; Christelle Moquereau; Mélanie Faria Da Cunha; Alexandra Pastor; Agathe Lepissier; Alexandre Hinzpeter; Jean-Paul Mornon; Guillaume Prestat; Aleksander Edelman
Journal:  Sci Rep       Date:  2021-03-25       Impact factor: 4.379

4.  Molecular dynamics and functional characterization of I37R-CFTR lasso mutation provide insights into channel gating activity.

Authors:  Sharon L Wong; Nikhil T Awatade; Miro A Astore; Katelin M Allan; Michael J Carnell; Iveta Slapetova; Po-Chia Chen; Alexander Capraro; Laura K Fawcett; Renee M Whan; Renate Griffith; Chee Y Ooi; Serdar Kuyucak; Adam Jaffe; Shafagh A Waters
Journal:  iScience       Date:  2021-12-31

5.  Fluorescence assay for simultaneous quantification of CFTR ion-channel function and plasma membrane proximity.

Authors:  Stella Prins; Emily Langron; Cato Hastings; Emily J Hill; Andra C Stefan; Lewis D Griffin; Paola Vergani
Journal:  J Biol Chem       Date:  2020-09-15       Impact factor: 5.157

Review 6.  Strategies for cystic fibrosis transmembrane conductance regulator inhibition: from molecular mechanisms to treatment for secretory diarrhoeas.

Authors:  Hugo R de Jonge; Maria C Ardelean; Marcel J C Bijvelds; Paola Vergani
Journal:  FEBS Lett       Date:  2020-11-16       Impact factor: 3.864

  6 in total

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