Literature DB >> 20801935

The TCT motif, a key component of an RNA polymerase II transcription system for the translational machinery.

Trevor J Parry1, Joshua W M Theisen, Jer-Yuan Hsu, Yuan-Liang Wang, David L Corcoran, Moriah Eustice, Uwe Ohler, James T Kadonaga.   

Abstract

The TCT motif (polypyrimidine initiator) encompasses the transcription start site of nearly all ribosomal protein genes in Drosophila and mammals. The TCT motif is required for transcription of ribosomal protein gene promoters. The TCT element resembles the Inr (initiator), but is not recognized by TFIID and cannot function in lieu of an Inr. However, a single T-to-A substitution converts the TCT element into a functionally active Inr. Thus, the TCT motif is a novel transcriptional element that is distinct from the Inr. These findings reveal a specialized TCT-based transcription system that is directed toward the synthesis of ribosomal proteins.

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Year:  2010        PMID: 20801935      PMCID: PMC2939363          DOI: 10.1101/gad.1951110

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  33 in total

Review 1.  Synthesis of the translational apparatus is regulated at the translational level.

Authors:  O Meyuhas
Journal:  Eur J Biochem       Date:  2000-11

2.  Three key subregions contribute to the function of the downstream RNA polymerase II core promoter.

Authors:  Joshua W M Theisen; Chin Yan Lim; James T Kadonaga
Journal:  Mol Cell Biol       Date:  2010-05-10       Impact factor: 4.272

3.  Cell-free transcription of a mouse ribosomal-protein-encoding gene: the effects of promoter mutations.

Authors:  S Chung; R P Perry
Journal:  Gene       Date:  1991-04       Impact factor: 3.688

Review 4.  Promoting developmental transcription.

Authors:  Uwe Ohler; David A Wassarman
Journal:  Development       Date:  2010-01       Impact factor: 6.868

5.  A basal transcription factor that activates or represses transcription.

Authors:  P J Willy; R Kobayashi; J T Kadonaga
Journal:  Science       Date:  2000-11-03       Impact factor: 47.728

Review 6.  Regulation of gene expression via the core promoter and the basal transcriptional machinery.

Authors:  Tamar Juven-Gershon; James T Kadonaga
Journal:  Dev Biol       Date:  2009-08-13       Impact factor: 3.582

7.  A paired-end sequencing strategy to map the complex landscape of transcription initiation.

Authors:  Ting Ni; David L Corcoran; Elizabeth A Rach; Shen Song; Eric P Spana; Yuan Gao; Uwe Ohler; Jun Zhu
Journal:  Nat Methods       Date:  2010-05-23       Impact factor: 28.547

Review 8.  Shifting players and paradigms in cell-specific transcription.

Authors:  Joseph A D'Alessio; Kevin J Wright; Robert Tjian
Journal:  Mol Cell       Date:  2009-12-25       Impact factor: 17.970

9.  MyoD targets TAF3/TRF3 to activate myogenin transcription.

Authors:  Maria Divina E Deato; Michael T Marr; Theo Sottero; Carla Inouye; Ping Hu; Robert Tjian
Journal:  Mol Cell       Date:  2008-10-10       Impact factor: 17.970

10.  MachiBase: a Drosophila melanogaster 5'-end mRNA transcription database.

Authors:  Budrul Ahsan; Taro L Saito; Shin-ichi Hashimoto; Keigo Muramatsu; Manabu Tsuda; Atsushi Sasaki; Kouji Matsushima; Toshiro Aigaki; Shinichi Morishita
Journal:  Nucleic Acids Res       Date:  2008-10-08       Impact factor: 16.971

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  55 in total

Review 1.  The unexpected traits associated with core promoter elements.

Authors:  Rivka Dikstein
Journal:  Transcription       Date:  2011 Sep-Oct

Review 2.  Metazoan promoters: emerging characteristics and insights into transcriptional regulation.

Authors:  Boris Lenhard; Albin Sandelin; Piero Carninci
Journal:  Nat Rev Genet       Date:  2012-03-06       Impact factor: 53.242

3.  The core promoter composition establishes a new dimension in developmental gene networks.

Authors:  Yonathan Zehavi; Anna Sloutskin; Olga Kuznetsov; Tamar Juven-Gershon
Journal:  Nucleus       Date:  2014 Jul-Aug       Impact factor: 4.197

Review 4.  The RNA Polymerase II Core Promoter in Drosophila.

Authors:  Long Vo Ngoc; George A Kassavetis; James T Kadonaga
Journal:  Genetics       Date:  2019-05       Impact factor: 4.562

5.  Computational analysis of auxin responsive elements in the Arabidopsis thaliana L. genome.

Authors:  Victoria V Mironova; Nadezda A Omelyanchuk; Daniil S Wiebe; Victor G Levitsky
Journal:  BMC Genomics       Date:  2014-12-19       Impact factor: 3.969

Review 6.  Perspectives on the RNA polymerase II core promoter.

Authors:  James T Kadonaga
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2011-12-06       Impact factor: 5.814

7.  Core promoter functions in the regulation of gene expression of Drosophila dorsal target genes.

Authors:  Yonathan Zehavi; Olga Kuznetsov; Avital Ovadia-Shochat; Tamar Juven-Gershon
Journal:  J Biol Chem       Date:  2014-03-14       Impact factor: 5.157

Review 8.  Eukaryotic core promoters and the functional basis of transcription initiation.

Authors:  Vanja Haberle; Alexander Stark
Journal:  Nat Rev Mol Cell Biol       Date:  2018-10       Impact factor: 94.444

Review 9.  So close, no matter how far: multiple paths connecting transcription to mRNA translation in eukaryotes.

Authors:  Boris Slobodin; Rivka Dikstein
Journal:  EMBO Rep       Date:  2020-08-16       Impact factor: 8.807

Review 10.  Core promoters in transcription: old problem, new insights.

Authors:  Ananda L Roy; Dinah S Singer
Journal:  Trends Biochem Sci       Date:  2015-02-10       Impact factor: 13.807

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