Literature DB >> 20064459

Shifting players and paradigms in cell-specific transcription.

Joseph A D'Alessio1, Kevin J Wright, Robert Tjian.   

Abstract

Historically, developmental-stage- and tissue-specific patterns of gene expression were assumed to be determined primarily by DNA regulatory sequences and their associated activators, while the general transcription machinery including core promoter recognition complexes, coactivators, and chromatin modifiers was held to be invariant. New evidence suggests that significant changes in these general transcription factors including TFIID, BAF, and Mediator may facilitate global changes in cell-type-specific transcription. 2009 Elsevier Inc.

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Year:  2009        PMID: 20064459      PMCID: PMC2807468          DOI: 10.1016/j.molcel.2009.12.011

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  65 in total

1.  A genome-wide housekeeping role for TFIID and a highly regulated stress-related role for SAGA in Saccharomyces cerevisiae.

Authors:  Kathryn L Huisinga; B Franklin Pugh
Journal:  Mol Cell       Date:  2004-02-27       Impact factor: 17.970

2.  Tissue-specific TAFs counteract Polycomb to turn on terminal differentiation.

Authors:  Xin Chen; Mark Hiller; Yasemin Sancak; Margaret T Fuller
Journal:  Science       Date:  2005-11-04       Impact factor: 47.728

3.  Ovarian granulosa cell survival and proliferation requires the gonad-selective TFIID subunit TAF4b.

Authors:  Ekaterina Voronina; Lindsay A Lovasco; Aron Gyuris; Robert A Baumgartner; Albert F Parlow; Richard N Freiman
Journal:  Dev Biol       Date:  2006-12-09       Impact factor: 3.582

4.  BAF250B-associated SWI/SNF chromatin-remodeling complex is required to maintain undifferentiated mouse embryonic stem cells.

Authors:  Zhijiang Yan; Zhong Wang; Lioudmila Sharova; Alexei A Sharov; Chen Ling; Yulan Piao; Kazuhiro Aiba; Ryo Matoba; Weidong Wang; Minoru S H Ko
Journal:  Stem Cells       Date:  2008-03-06       Impact factor: 6.277

5.  Regulation of dendritic development by neuron-specific chromatin remodeling complexes.

Authors:  Jiang I Wu; Julie Lessard; Ivan A Olave; Zilong Qiu; Anirvan Ghosh; Isabella A Graef; Gerald R Crabtree
Journal:  Neuron       Date:  2007-10-04       Impact factor: 17.173

6.  Maintenance of spermatogenesis requires TAF4b, a gonad-specific subunit of TFIID.

Authors:  Allison E Falender; Richard N Freiman; Kenneth G Geles; Kirk C Lo; KeumSil Hwang; Dolores J Lamb; Patricia L Morris; Robert Tjian; JoAnne S Richards
Journal:  Genes Dev       Date:  2005-03-17       Impact factor: 11.361

7.  Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors.

Authors:  Kazutoshi Takahashi; Shinya Yamanaka
Journal:  Cell       Date:  2006-08-10       Impact factor: 41.582

8.  Specialized and redundant roles of TBP and a vertebrate-specific TBP paralog in embryonic gene regulation in Xenopus.

Authors:  Zainab Jallow; Ulrike G Jacobi; Daniel L Weeks; Igor B Dawid; Gert Jan C Veenstra
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-02       Impact factor: 11.205

9.  An essential switch in subunit composition of a chromatin remodeling complex during neural development.

Authors:  Julie Lessard; Jiang I Wu; Jeffrey A Ranish; Mimi Wan; Monte M Winslow; Brett T Staahl; Hai Wu; Ruedi Aebersold; Isabella A Graef; Gerald R Crabtree
Journal:  Neuron       Date:  2007-07-19       Impact factor: 17.173

10.  MyoD targets TAF3/TRF3 to activate myogenin transcription.

Authors:  Maria Divina E Deato; Michael T Marr; Theo Sottero; Carla Inouye; Ping Hu; Robert Tjian
Journal:  Mol Cell       Date:  2008-10-10       Impact factor: 17.970

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  70 in total

1.  The TCT motif, a key component of an RNA polymerase II transcription system for the translational machinery.

Authors:  Trevor J Parry; Joshua W M Theisen; Jer-Yuan Hsu; Yuan-Liang Wang; David L Corcoran; Moriah Eustice; Uwe Ohler; James T Kadonaga
Journal:  Genes Dev       Date:  2010-08-27       Impact factor: 11.361

Review 2.  Inducible gene expression: diverse regulatory mechanisms.

Authors:  Vikki M Weake; Jerry L Workman
Journal:  Nat Rev Genet       Date:  2010-04-27       Impact factor: 53.242

3.  Three key subregions contribute to the function of the downstream RNA polymerase II core promoter.

Authors:  Joshua W M Theisen; Chin Yan Lim; James T Kadonaga
Journal:  Mol Cell Biol       Date:  2010-05-10       Impact factor: 4.272

Review 4.  An architectural genetic and epigenetic perspective.

Authors:  Gary S Stein; Janet L Stein; Andre J van Wijnen; Jane B Lian; Sayyed K Zaidi; Jeffrey A Nickerson; Martin A Montecino; Daniel W Young
Journal:  Integr Biol (Camb)       Date:  2010-12-24       Impact factor: 2.192

Review 5.  The intertwined roles of transcription and repair proteins.

Authors:  Yick W Fong; Claudia Cattoglio; Robert Tjian
Journal:  Mol Cell       Date:  2013-11-07       Impact factor: 17.970

6.  The transcription factor Pax5 regulates its target genes by recruiting chromatin-modifying proteins in committed B cells.

Authors:  Shane McManus; Anja Ebert; Giorgia Salvagiotto; Jasna Medvedovic; Qiong Sun; Ido Tamir; Markus Jaritz; Hiromi Tagoh; Meinrad Busslinger
Journal:  EMBO J       Date:  2011-05-06       Impact factor: 11.598

7.  Subnuclear segregation of genes and core promoter factors in myogenesis.

Authors:  Jie Yao; Richard D Fetter; Ping Hu; Eric Betzig; Robert Tjian
Journal:  Genes Dev       Date:  2011-02-28       Impact factor: 11.361

8.  Alternative transcription exceeds alternative splicing in generating the transcriptome diversity of cerebellar development.

Authors:  Sharmistha Pal; Ravi Gupta; Hyunsoo Kim; Priyankara Wickramasinghe; Valérie Baubet; Louise C Showe; Nadia Dahmane; Ramana V Davuluri
Journal:  Genome Res       Date:  2011-06-28       Impact factor: 9.043

Review 9.  Gene-specific transcription activation via long-range allosteric shape-shifting.

Authors:  Chung-Jung Tsai; Ruth Nussinov
Journal:  Biochem J       Date:  2011-10-01       Impact factor: 3.857

10.  The origin and early evolution of eukaryotes in the light of phylogenomics.

Authors:  Eugene V Koonin
Journal:  Genome Biol       Date:  2010-05-05       Impact factor: 13.583

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