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Literature DB >> 20023156

Promoting developmental transcription.

Abstract

Animal growth and development depend on the precise control of gene expression at the level of transcription. A central role in the regulation of developmental transcription is attributed to transcription factors that bind DNA enhancer elements, which are often located far from gene transcription start sites. Here, we review recent studies that have uncovered significant regulatory functions in developmental transcription for the TFIID basal transcription factors and for the DNA core promoter elements that are located close to transcription start sites.

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Year: 2010 PMID： 20023156 PMCID： PMC2796937 DOI： 10.1242/dev.035493

Source DB: PubMed Journal: Development ISSN： 0950-1991 Impact factor: 6.868

131 in total

1. Identification of hTAF(II)80 delta links apoptotic signaling pathways to transcription factor TFIID function.

Authors: B Bell; E Scheer; L Tora
Journal: Mol Cell Date: 2001-09 Impact factor: 17.970

2. Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4.

Authors: Michiel Vermeulen; Klaas W Mulder; Sergei Denissov; W W M Pim Pijnappel; Frederik M A van Schaik; Radhika A Varier; Marijke P A Baltissen; Henk G Stunnenberg; Matthias Mann; H Th Marc Timmers
Journal: Cell Date: 2007-09-20 Impact factor: 41.582

3. New core promoter element in RNA polymerase II-dependent transcription: sequence-specific DNA binding by transcription factor IIB.

Authors: T Lagrange; A N Kapanidis; H Tang; D Reinberg; R H Ebright
Journal: Genes Dev Date: 1998-01-01 Impact factor: 11.361

4. Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors: K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal: Nature Date: 1997-09-18 Impact factor: 49.962

5. Requirement of tissue-selective TBP-associated factor TAFII105 in ovarian development.

Authors: R N Freiman; S R Albright; S Zheng; W C Sha; R E Hammer; R Tjian
Journal: Science Date: 2001-09-14 Impact factor: 47.728

6. The TAF(II)250 subunit of TFIID has histone acetyltransferase activity.

Authors: C A Mizzen; X J Yang; T Kokubo; J E Brownell; A J Bannister; T Owen-Hughes; J Workman; L Wang; S L Berger; T Kouzarides; Y Nakatani; C D Allis
Journal: Cell Date: 1996-12-27 Impact factor: 41.582

7. Purification of active TFIID from Saccharomyces cerevisiae. Extensive promoter contacts and co-activator function.

Authors: Roy Auty; Hanno Steen; Lawrence C Myers; Jim Persinger; Blaine Bartholomew; Steven P Gygi; Stephen Buratowski
Journal: J Biol Chem Date: 2004-09-22 Impact factor: 5.157

8. Myogenin gene disruption results in perinatal lethality because of severe muscle defect.

Authors: Y Nabeshima; K Hanaoka; M Hayasaka; E Esumi; S Li; I Nonaka; Y Nabeshima
Journal: Nature Date: 1993-08-05 Impact factor: 49.962

9. Analysis of TATA-binding protein 2 (TBP2) and TBP expression suggests different roles for the two proteins in regulation of gene expression during oogenesis and early mouse development.

Authors: Emese Gazdag; Aleksandar Rajkovic; Maria Elena Torres-Padilla; Làszlò Tora
Journal: Reproduction Date: 2007-07 Impact factor: 3.906

10. The transcriptional landscape of the mammalian genome.

Authors: P Carninci; T Kasukawa; S Katayama; J Gough; M C Frith; N Maeda; R Oyama; T Ravasi; B Lenhard; C Wells; R Kodzius; K Shimokawa; V B Bajic; S E Brenner; S Batalov; A R R Forrest; M Zavolan; M J Davis; L G Wilming; V Aidinis; J E Allen; A Ambesi-Impiombato; R Apweiler; R N Aturaliya; T L Bailey; M Bansal; L Baxter; K W Beisel; T Bersano; H Bono; A M Chalk; K P Chiu; V Choudhary; A Christoffels; D R Clutterbuck; M L Crowe; E Dalla; B P Dalrymple; B de Bono; G Della Gatta; D di Bernardo; T Down; P Engstrom; M Fagiolini; G Faulkner; C F Fletcher; T Fukushima; M Furuno; S Futaki; M Gariboldi; P Georgii-Hemming; T R Gingeras; T Gojobori; R E Green; S Gustincich; M Harbers; Y Hayashi; T K Hensch; N Hirokawa; D Hill; L Huminiecki; M Iacono; K Ikeo; A Iwama; T Ishikawa; M Jakt; A Kanapin; M Katoh; Y Kawasawa; J Kelso; H Kitamura; H Kitano; G Kollias; S P T Krishnan; A Kruger; S K Kummerfeld; I V Kurochkin; L F Lareau; D Lazarevic; L Lipovich; J Liu; S Liuni; S McWilliam; M Madan Babu; M Madera; L Marchionni; H Matsuda; S Matsuzawa; H Miki; F Mignone; S Miyake; K Morris; S Mottagui-Tabar; N Mulder; N Nakano; H Nakauchi; P Ng; R Nilsson; S Nishiguchi; S Nishikawa; F Nori; O Ohara; Y Okazaki; V Orlando; K C Pang; W J Pavan; G Pavesi; G Pesole; N Petrovsky; S Piazza; J Reed; J F Reid; B Z Ring; M Ringwald; B Rost; Y Ruan; S L Salzberg; A Sandelin; C Schneider; C Schönbach; K Sekiguchi; C A M Semple; S Seno; L Sessa; Y Sheng; Y Shibata; H Shimada; K Shimada; D Silva; B Sinclair; S Sperling; E Stupka; K Sugiura; R Sultana; Y Takenaka; K Taki; K Tammoja; S L Tan; S Tang; M S Taylor; J Tegner; S A Teichmann; H R Ueda; E van Nimwegen; R Verardo; C L Wei; K Yagi; H Yamanishi; E Zabarovsky; S Zhu; A Zimmer; W Hide; C Bult; S M Grimmond; R D Teasdale; E T Liu; V Brusic; J Quackenbush; C Wahlestedt; J S Mattick; D A Hume; C Kai; D Sasaki; Y Tomaru; S Fukuda; M Kanamori-Katayama; M Suzuki; J Aoki; T Arakawa; J Iida; K Imamura; M Itoh; T Kato; H Kawaji; N Kawagashira; T Kawashima; M Kojima; S Kondo; H Konno; K Nakano; N Ninomiya; T Nishio; M Okada; C Plessy; K Shibata; T Shiraki; S Suzuki; M Tagami; K Waki; A Watahiki; Y Okamura-Oho; H Suzuki; J Kawai; Y Hayashizaki
Journal: Science Date: 2005-09-02 Impact factor: 47.728

43 in total

Review 10. EKLF/KLF1, a tissue-restricted integrator of transcriptional control, chromatin remodeling, and lineage determination.

Authors: Yvette Y Yien; James J Bieker
Journal: Mol Cell Biol Date: 2012-10-22 Impact factor: 4.272

Promoting developmental transcription.

1. Identification of hTAF(II)80 delta links apoptotic signaling pathways to transcription factor TFIID function.

2. Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4.

3. New core promoter element in RNA polymerase II-dependent transcription: sequence-specific DNA binding by transcription factor IIB.

4. Crystal structure of the nucleosome core particle at 2.8 A resolution.

5. Requirement of tissue-selective TBP-associated factor TAFII105 in ovarian development.

6. The TAF(II)250 subunit of TFIID has histone acetyltransferase activity.

7. Purification of active TFIID from Saccharomyces cerevisiae. Extensive promoter contacts and co-activator function.

8. Myogenin gene disruption results in perinatal lethality because of severe muscle defect.

9. Analysis of TATA-binding protein 2 (TBP2) and TBP expression suggests different roles for the two proteins in regulation of gene expression during oogenesis and early mouse development.

10. The transcriptional landscape of the mammalian genome.

Review 1. Metazoan promoters: emerging characteristics and insights into transcriptional regulation.

2. The TCT motif, a key component of an RNA polymerase II transcription system for the translational machinery.

3. TIPR: transcription initiation pattern recognition on a genome scale.

4. TAF4b is required for mouse spermatogonial stem cell development.

5. Combinatorial Gene Regulation through Kinetic Control of the Transcription Cycle.

6. The core promoter composition establishes a new dimension in developmental gene networks.

Review 7. Perspectives on the RNA polymerase II core promoter.

8. Core promoter functions in the regulation of gene expression of Drosophila dorsal target genes.

9. Interpreting the regulatory genome: the genomics of transcription factor function in Drosophila melanogaster.

Review 10. EKLF/KLF1, a tissue-restricted integrator of transcriptional control, chromatin remodeling, and lineage determination.