Literature DB >> 31053615

The RNA Polymerase II Core Promoter in Drosophila.

Long Vo Ngoc1, George A Kassavetis1, James T Kadonaga2.   

Abstract

Transcription by RNA polymerase II initiates at the core promoter, which is sometimes referred to as the "gateway to transcription." Here, we describe the properties of the RNA polymerase II core promoter in Drosophila The core promoter is at a strategic position in the expression of genes, as it is the site of convergence of the signals that lead to transcriptional activation. Importantly, core promoters are diverse in terms of their structure and function. They are composed of various combinations of sequence motifs such as the TATA box, initiator (Inr), and downstream core promoter element (DPE). Different types of core promoters are transcribed via distinct mechanisms. Moreover, some transcriptional enhancers exhibit specificity for particular types of core promoters. These findings indicate that the core promoter is a central component of the transcriptional apparatus that regulates gene expression.
Copyright © 2019 by the Genetics Society of America.

Entities:  

Keywords:  FlyBook; RNA polymerase II; TBP; TBP-related factors; core promoter; core promoter elements; sequence-specific transcription factors

Mesh:

Substances:

Year:  2019        PMID: 31053615      PMCID: PMC6499525          DOI: 10.1534/genetics.119.302021

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  99 in total

1.  DNA binding site selection by RNA polymerase II TAFs: a TAF(II)250-TAF(II)150 complex recognizes the initiator.

Authors:  G E Chalkley; C P Verrijzer
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2.  Promoter-selective properties of the TBP-related factor TRF1.

Authors:  M C Holmes; R Tjian
Journal:  Science       Date:  2000-05-05       Impact factor: 47.728

3.  The downstream promoter element DPE appears to be as widely used as the TATA box in Drosophila core promoters.

Authors:  A K Kutach; J T Kadonaga
Journal:  Mol Cell Biol       Date:  2000-07       Impact factor: 4.272

Review 4.  Helix-loop-helix proteins: regulators of transcription in eucaryotic organisms.

Authors:  M E Massari; C Murre
Journal:  Mol Cell Biol       Date:  2000-01       Impact factor: 4.272

5.  TATA box-binding protein (TBP)-related factor 2 (TRF2), a third member of the TBP family.

Authors:  M D Rabenstein; S Zhou; J T Lis; R Tjian
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-27       Impact factor: 11.205

6.  TATA element recognition by the TATA box-binding protein has been conserved throughout evolution.

Authors:  G A Patikoglou; J L Kim; L Sun; S H Yang; T Kodadek; S K Burley
Journal:  Genes Dev       Date:  1999-12-15       Impact factor: 11.361

7.  Structural basis of preinitiation complex assembly on human pol II promoters.

Authors:  F T Tsai; P B Sigler
Journal:  EMBO J       Date:  2000-01-04       Impact factor: 11.598

8.  A TRF1:BRF complex directs Drosophila RNA polymerase III transcription.

Authors:  S Takada; J T Lis; S Zhou; R Tjian
Journal:  Cell       Date:  2000-05-26       Impact factor: 41.582

9.  Human TATA-binding protein-related factor-2 (hTRF2) stably associates with hTFIIA in HeLa cells.

Authors:  M Teichmann; Z Wang; E Martinez; A Tjernberg; D Zhang; F Vollmer; B T Chait; R G Roeder
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-23       Impact factor: 11.205

Review 10.  The TBP-like factor: an alternative transcription factor in metazoa?

Authors:  J C Dantonel; J M Wurtz; O Poch; D Moras; L Tora
Journal:  Trends Biochem Sci       Date:  1999-09       Impact factor: 13.807

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  21 in total

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Authors:  Moe Yokoshi; Koji Kawasaki; Manuel Cambón; Takashi Fukaya
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2.  Meta-Analysis of Immune Induced Gene Expression Changes in Diverse Drosophila melanogaster Innate Immune Responses.

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Journal:  Insects       Date:  2022-05-23       Impact factor: 3.139

Review 3.  Non-coding regulatory elements: Potential roles in disease and the case of epilepsy.

Authors:  Susanna Pagni; James D Mills; Adam Frankish; Jonathan M Mudge; Sanjay M Sisodiya
Journal:  Neuropathol Appl Neurobiol       Date:  2021-12-16       Impact factor: 6.250

Review 4.  Evolution of Regulated Transcription.

Authors:  Oleg V Bylino; Airat N Ibragimov; Yulii V Shidlovskii
Journal:  Cells       Date:  2020-07-12       Impact factor: 6.600

5.  A unified view of the sequence and functional organization of the human RNA polymerase II promoter.

Authors:  Donal S Luse; Mrutyunjaya Parida; Benjamin M Spector; Kyle A Nilson; David H Price
Journal:  Nucleic Acids Res       Date:  2020-08-20       Impact factor: 16.971

6.  Human Microfibrillar-Associated Protein 4 (MFAP4) Gene Promoter: A TATA-Less Promoter That Is Regulated by Retinol and Coenzyme Q10 in Human Fibroblast Cells.

Authors:  Ying-Ju Lin; An-Ni Chen; Xi Jiang Yin; Chunxiang Li; Chih-Chien Lin
Journal:  Int J Mol Sci       Date:  2020-11-09       Impact factor: 5.923

7.  Effects of codon usage on gene expression are promoter context dependent.

Authors:  Qian Yang; Xueliang Lyu; Fangzhou Zhao; Yi Liu
Journal:  Nucleic Acids Res       Date:  2021-01-25       Impact factor: 16.971

Review 8.  What do Transcription Factors Interact With?

Authors:  Haining Chen; B Franklin Pugh
Journal:  J Mol Biol       Date:  2021-02-20       Impact factor: 6.151

9.  Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae.

Authors:  Chenxi Qiu; Huiyan Jin; Irina Vvedenskaya; Jordi Abante Llenas; Tingting Zhao; Indranil Malik; Alex M Visbisky; Scott L Schwartz; Ping Cui; Pavel Čabart; Kang Hoo Han; William K M Lai; Richard P Metz; Charles D Johnson; Sing-Hoi Sze; B Franklin Pugh; Bryce E Nickels; Craig D Kaplan
Journal:  Genome Biol       Date:  2020-06-02       Impact factor: 13.583

Review 10.  Transcriptional Enhancers in Drosophila.

Authors:  Stephen Small; David N Arnosti
Journal:  Genetics       Date:  2020-09       Impact factor: 4.562

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