Literature DB >> 20798181

OpenHelix: bioinformatics education outside of a different box.

Jennifer M Williams1, Mary E Mangan, Cynthia Perreault-Micale, Scott Lathe, Neeraj Sirohi, Warren C Lathe.   

Abstract

The amount of biological data is increasing rapidly, and will continue to increase as new rapid technologies are developed. Professionals in every area of bioscience will have data management needs that require publicly available bioinformatics resources. Not all scientists desire a formal bioinformatics education but would benefit from more informal educational sources of learning. Effective bioinformatics education formats will address a broad range of scientific needs, will be aimed at a variety of user skill levels, and will be delivered in a number of different formats to address different learning styles. Informal sources of bioinformatics education that are effective are available, and will be explored in this review.

Mesh:

Year:  2010        PMID: 20798181      PMCID: PMC2984537          DOI: 10.1093/bib/bbq026

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  30 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  dbSNP: the NCBI database of genetic variation.

Authors:  S T Sherry; M H Ward; M Kholodov; J Baker; L Phan; E M Smigielski; K Sirotkin
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

3.  The human genome browser at UCSC.

Authors:  W James Kent; Charles W Sugnet; Terrence S Furey; Krishna M Roskin; Tom H Pringle; Alan M Zahler; David Haussler
Journal:  Genome Res       Date:  2002-06       Impact factor: 9.043

4.  The NCBI dbGaP database of genotypes and phenotypes.

Authors:  Matthew D Mailman; Michael Feolo; Yumi Jin; Masato Kimura; Kimberly Tryka; Rinat Bagoutdinov; Luning Hao; Anne Kiang; Justin Paschall; Lon Phan; Natalia Popova; Stephanie Pretel; Lora Ziyabari; Moira Lee; Yu Shao; Zhen Y Wang; Karl Sirotkin; Minghong Ward; Michael Kholodov; Kerry Zbicz; Jeffrey Beck; Michael Kimelman; Sergey Shevelev; Don Preuss; Eugene Yaschenko; Alan Graeff; James Ostell; Stephen T Sherry
Journal:  Nat Genet       Date:  2007-10       Impact factor: 38.330

5.  DATABASE: A new forum for biological databases and curation.

Authors:  David Landsman; Robert Gentleman; Janet Kelso; B F Francis Ouellette
Journal:  Database (Oxford)       Date:  2009-03-16       Impact factor: 3.451

6.  Evolution in bioinformatic resources: 2009 update on the Bioinformatics Links Directory.

Authors:  Michelle D Brazas; Joseph Tadashi Yamada; B F Francis Ouellette
Journal:  Nucleic Acids Res       Date:  2009-06-15       Impact factor: 16.971

7.  Editorial. Nucleic Acids Research annual Web Server Issue in 2010.

Authors:  Gary Benson
Journal:  Nucleic Acids Res       Date:  2010-07       Impact factor: 16.971

8.  An innovative plant genomics and gene annotation program for high school, community college, and university faculty.

Authors:  Gokhan Hacisalihoglu; Uwe Hilgert; E Bruce Nash; David A Micklos
Journal:  CBE Life Sci Educ       Date:  2008       Impact factor: 3.325

9.  The Online Bioinformatics Resources Collection at the University of Pittsburgh Health Sciences Library System--a one-stop gateway to online bioinformatics databases and software tools.

Authors:  Yi-Bu Chen; Ansuman Chattopadhyay; Phillip Bergen; Cynthia Gadd; Nancy Tannery
Journal:  Nucleic Acids Res       Date:  2006-11-15       Impact factor: 16.971

10.  The protein structure initiative structural genomics knowledgebase.

Authors:  Helen M Berman; John D Westbrook; Margaret J Gabanyi; Wendy Tao; Raship Shah; Andrei Kouranov; Torsten Schwede; Konstantin Arnold; Florian Kiefer; Lorenza Bordoli; Jürgen Kopp; Michael Podvinec; Paul D Adams; Lester G Carter; Wladek Minor; Rajesh Nair; Joshua La Baer
Journal:  Nucleic Acids Res       Date:  2008-11-14       Impact factor: 16.971

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  4 in total

1.  Gramene database in 2010: updates and extensions.

Authors:  Ken Youens-Clark; Ed Buckler; Terry Casstevens; Charles Chen; Genevieve Declerck; Paul Derwent; Palitha Dharmawardhana; Pankaj Jaiswal; Paul Kersey; A S Karthikeyan; Jerry Lu; Susan R McCouch; Liya Ren; William Spooner; Joshua C Stein; Jim Thomason; Sharon Wei; Doreen Ware
Journal:  Nucleic Acids Res       Date:  2010-11-13       Impact factor: 16.971

2.  Tutorial videos of bioinformatics resources: online distribution trial in Japan named TogoTV.

Authors:  Shin Kawano; Hiromasa Ono; Toshihisa Takagi; Hidemasa Bono
Journal:  Brief Bioinform       Date:  2011-07-29       Impact factor: 11.622

Review 3.  A survey of scholarly literature describing the field of bioinformatics education and bioinformatics educational research.

Authors:  Alejandra J Magana; Manaz Taleyarkhan; Daniela Rivera Alvarado; Michael Kane; John Springer; Kari Clase
Journal:  CBE Life Sci Educ       Date:  2014       Impact factor: 3.325

4.  Genetic variants determining survival and fertility in an adverse African environment: a population-based large-scale candidate gene association study.

Authors:  Jacob J E Koopman; Jeroen Pijpe; Stefan Böhringer; David van Bodegom; Ulrika K Eriksson; Hernando Sanchez-Faddeev; Juventus B Ziem; Bas Zwaan; P Eline Slagboom; Peter de Knijff; Rudi G J Westendorp
Journal:  Aging (Albany NY)       Date:  2016-07       Impact factor: 5.682

  4 in total

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