Literature DB >> 18765753

An innovative plant genomics and gene annotation program for high school, community college, and university faculty.

Gokhan Hacisalihoglu1, Uwe Hilgert, E Bruce Nash, David A Micklos.   

Abstract

Today's biology educators face the challenge of training their students in modern molecular biology techniques including genomics and bioinformatics. The Dolan DNA Learning Center (DNALC) of Cold Spring Harbor Laboratory has developed and disseminated a bench- and computer-based plant genomics curriculum for biology faculty. In 2007, a five-day "Plant Genomics and Gene Annotation" workshop was held at Florida A&M University in Tallahassee, FL, to enhance participants' knowledge and understanding of plant molecular genetics and assist them in developing and honing their laboratory and computer skills. Florida A&M University is a historically black university with over 95% African-American student enrollment. Sixteen participants, including high school (56%) and community college faculty (25%), attended the workshop. Participants carried out in vitro and in silico experiments with maize, Arabidopsis, soybean, and food products to determine the genotype of the samples. Benefits of the workshop included increased awareness of plant biology research for high school and college level students. Participants completed pre- and postworkshop evaluations for the measurement of effectiveness. Participants demonstrated an overall improvement in their postworkshop evaluation scores. This article provides a detailed description of workshop activities, as well as assessment and long-term support for broad classroom implementation.

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Year:  2008        PMID: 18765753      PMCID: PMC2527984          DOI: 10.1187/cbe.07-08-0061

Source DB:  PubMed          Journal:  CBE Life Sci Educ        ISSN: 1931-7913            Impact factor:   3.325


  7 in total

1.  Genetically modified organisms in food-screening and specific detection by polymerase chain reaction.

Authors:  S Vollenhofer; K Burg; J Schmidt; H Kroath
Journal:  J Agric Food Chem       Date:  1999-12       Impact factor: 5.279

2.  A simple and rapid method for the preparation of plant genomic DNA for PCR analysis.

Authors:  K Edwards; C Johnstone; C Thompson
Journal:  Nucleic Acids Res       Date:  1991-03-25       Impact factor: 16.971

3.  Chromosome organization and genic expression.

Authors:  B McCLINTOCK
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1951

4.  The CURLY LEAF gene controls both division and elongation of cells during the expansion of the leaf blade in Arabidopsis thaliana.

Authors:  G T Kim; H Tsukaya; H Uchimiya
Journal:  Planta       Date:  1998-10       Impact factor: 4.116

5.  AGO1 defines a novel locus of Arabidopsis controlling leaf development.

Authors:  K Bohmert; I Camus; C Bellini; D Bouchez; M Caboche; C Benning
Journal:  EMBO J       Date:  1998-01-02       Impact factor: 11.598

6.  Herbicide resistance in transgenic plants expressing a bacterial detoxification gene.

Authors:  D M Stalker; K E McBride; L D Malyj
Journal:  Science       Date:  1988-10-21       Impact factor: 47.728

Review 7.  Apollo: a sequence annotation editor.

Authors:  S E Lewis; S M J Searle; N Harris; M Gibson; V Lyer; J Richter; C Wiel; L Bayraktaroglu; E Birney; M A Crosby; J S Kaminker; B B Matthews; S E Prochnik; C D Smithy; J L Tupy; G M Rubin; S Misra; C J Mungall; M E Clamp
Journal:  Genome Biol       Date:  2002-12-23       Impact factor: 13.583

  7 in total
  4 in total

Review 1.  OpenHelix: bioinformatics education outside of a different box.

Authors:  Jennifer M Williams; Mary E Mangan; Cynthia Perreault-Micale; Scott Lathe; Neeraj Sirohi; Warren C Lathe
Journal:  Brief Bioinform       Date:  2010-08-26       Impact factor: 11.622

2.  The genomics education partnership: successful integration of research into laboratory classes at a diverse group of undergraduate institutions.

Authors:  Christopher D Shaffer; Consuelo Alvarez; Cheryl Bailey; Daron Barnard; Satish Bhalla; Chitra Chandrasekaran; Vidya Chandrasekaran; Hui-Min Chung; Douglas R Dorer; Chunguang Du; Todd T Eckdahl; Jeff L Poet; Donald Frohlich; Anya L Goodman; Yuying Gosser; Charles Hauser; Laura L M Hoopes; Diana Johnson; Christopher J Jones; Marian Kaehler; Nighat Kokan; Olga R Kopp; Gary A Kuleck; Gerard McNeil; Robert Moss; Jennifer L Myka; Alexis Nagengast; Robert Morris; Paul J Overvoorde; Elizabeth Shoop; Susan Parrish; Kelynne Reed; E Gloria Regisford; Dennis Revie; Anne G Rosenwald; Ken Saville; Stephanie Schroeder; Mary Shaw; Gary Skuse; Christopher Smith; Mary Smith; Eric P Spana; Mary Spratt; Joyce Stamm; Jeff S Thompson; Matthew Wawersik; Barbara A Wilson; Jim Youngblom; Wilson Leung; Jeremy Buhler; Elaine R Mardis; David Lopatto; Sarah C R Elgin
Journal:  CBE Life Sci Educ       Date:  2010       Impact factor: 3.325

3.  The use of an active learning approach in a SCALE-UP learning space improves academic performance in undergraduate General Biology.

Authors:  Gokhan Hacisalihoglu; Desmond Stephens; Lewis Johnson; Maurice Edington
Journal:  PLoS One       Date:  2018-05-24       Impact factor: 3.240

4.  Bioinformatics projects supporting life-sciences learning in high schools.

Authors:  Isabel Marques; Paulo Almeida; Renato Alves; Maria João Dias; Ana Godinho; José B Pereira-Leal
Journal:  PLoS Comput Biol       Date:  2014-01-23       Impact factor: 4.475

  4 in total

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