Literature DB >> 20720164

Quantitative 3D elemental microtomography of Cyclotella meneghiniana at 400-nm resolution.

Martin D de Jonge1, Christian Holzner, Stephen B Baines, Benjamin S Twining, Konstantin Ignatyev, Julia Diaz, Daryl L Howard, Daniel Legnini, Antonino Miceli, Ian McNulty, Chris J Jacobsen, Stefan Vogt.   

Abstract

X-ray fluorescence tomography promises to map elemental distributions in unstained and unfixed biological specimens in three dimensions at high resolution and sensitivity, offering unparalleled insight in medical, biological, and environmental sciences. X-ray fluorescence tomography of biological specimens has been viewed as impractical-and perhaps even impossible for routine application-due to the large time required for scanning tomography and significant radiation dose delivered to the specimen during the imaging process. Here, we demonstrate submicron resolution X-ray fluorescence tomography of a whole unstained biological specimen, quantifying three-dimensional distributions of the elements Si, P, S, Cl, K, Ca, Mn, Fe, Cu, and Zn in the freshwater diatom Cyclotella meneghiniana with 400-nm resolution, improving the spatial resolution by over an order of magnitude. The resulting maps faithfully reproduce cellular structure revealing unexpected patterns that may elucidate the role of metals in diatom biology and of diatoms in global element cycles. With anticipated improvements in data acquisition and detector sensitivity, such measurements could become routine in the near future.

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Year:  2010        PMID: 20720164      PMCID: PMC2936603          DOI: 10.1073/pnas.1001469107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  17 in total

1.  Pleuralins are involved in theca differentiation in the diatom Cylindrotheca fusiformis.

Authors:  N Kröger; R Wetherbee
Journal:  Protist       Date:  2000-10

2.  UCSF Chimera--a visualization system for exploratory research and analysis.

Authors:  Eric F Pettersen; Thomas D Goddard; Conrad C Huang; Gregory S Couch; Daniel M Greenblatt; Elaine C Meng; Thomas E Ferrin
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

3.  Limited-data computed tomography algorithms for the physical sciences.

Authors:  D Verhoeven
Journal:  Appl Opt       Date:  1993-07-10       Impact factor: 1.980

4.  Synchrotron-based infrared and X-ray imaging shows focalized accumulation of Cu and Zn co-localized with beta-amyloid deposits in Alzheimer's disease.

Authors:  Lisa M Miller; Qi Wang; Tejas P Telivala; Randy J Smith; Antonio Lanzirotti; Judit Miklossy
Journal:  J Struct Biol       Date:  2005-11-14       Impact factor: 2.867

Review 5.  Far-field optical nanoscopy.

Authors:  Stefan W Hell
Journal:  Science       Date:  2007-05-25       Impact factor: 47.728

6.  The assimilation of elements ingested by marine copepods.

Authors:  J R Reinfelder; N S Fisher
Journal:  Science       Date:  1991-02-15       Impact factor: 47.728

7.  Exploring ocean biogeochemistry by single-cell microprobe analysis of protist elemental composition.

Authors:  Benjamin S Twining; Stephen B Baines; Stefan Vogt; Martin D de Jonge
Journal:  J Eukaryot Microbiol       Date:  2008 May-Jun       Impact factor: 3.346

8.  Differential phase contrast with a segmented detector in a scanning X-ray microprobe.

Authors:  B Hornberger; M D de Jonge; M Feser; P Holl; C Holzner; C Jacobsen; D Legnini; D Paterson; P Rehak; L Strüder; S Vogt
Journal:  J Synchrotron Radiat       Date:  2008-05-08       Impact factor: 2.616

9.  Changes of the phagosomal elemental concentrations by Mycobacterium tuberculosis Mramp.

Authors:  Dirk Wagner; Jörg Maser; Ivana Moric; Neio Boechat; Stefan Vogt; Brigitte Gicquel; Barry Lai; Jean-Marc Reyrat; Luiz Bermudez
Journal:  Microbiology (Reading)       Date:  2005-01       Impact factor: 2.777

10.  Hard X-ray microprobe studies of chromium(VI)-treated V79 Chinese hamster lung cells: intracellular mapping of the biotransformation products of a chromium carcinogen.

Authors:  Carolyn T Dillon; Peter A Lay; Brendan J Kennedy; Anton P J Stampfl; Zhonghou Cai; Peter Ilinski; William Rodrigues; Daniel G Legnini; Barry Lai; Jörg Maser
Journal:  J Biol Inorg Chem       Date:  2002-02-26       Impact factor: 3.358

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  39 in total

Review 1.  Bridging the divide between human and environmental nanotoxicology.

Authors:  Anzhela Malysheva; Enzo Lombi; Nicolas H Voelcker
Journal:  Nat Nanotechnol       Date:  2015-10       Impact factor: 39.213

2.  The Bionanoprobe: Synchrotron-based Hard X-ray Fluorescence Microscopy for 2D/3D Trace Element Mapping.

Authors:  Si Chen; Tatjana Paunesku; Ye Yuan; Qiaoling Jin; Benjamin Hornberger; Claus Flachenecker; Barry Lai; Keith Brister; Chris Jacobsen; Gayle Woloschak; Stefan Vogt
Journal:  Micros Today       Date:  2015-04-29

3.  Alignment of low-dose X-ray fluorescence tomography images using differential phase contrast.

Authors:  Young Pyo Hong; Sophie-Charlotte Gleber; Thomas V O'Halloran; Emily L Que; Reiner Bleher; Stefan Vogt; Teresa K Woodruff; Chris Jacobsen
Journal:  J Synchrotron Radiat       Date:  2013-12-12       Impact factor: 2.616

4.  3D spectral imaging with synchrotron Fourier transform infrared spectro-microtomography.

Authors:  Michael C Martin; Charlotte Dabat-Blondeau; Miriam Unger; Julia Sedlmair; Dilworth Y Parkinson; Hans A Bechtel; Barbara Illman; Jonathan M Castro; Marco Keiluweit; David Buschke; Brenda Ogle; Michael J Nasse; Carol J Hirschmugl
Journal:  Nat Methods       Date:  2013-08-04       Impact factor: 28.547

5.  A New Workflow for x-ray fluorescence tomography: MAPSToTomoPy.

Authors:  Young Pyo Hong; Si Chen; Chris Jacobsen
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2015-09-18

6.  Simultaneous cryo X-ray ptychographic and fluorescence microscopy of green algae.

Authors:  Junjing Deng; David J Vine; Si Chen; Youssef S G Nashed; Qiaoling Jin; Nicholas W Phillips; Tom Peterka; Rob Ross; Stefan Vogt; Chris J Jacobsen
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-09       Impact factor: 11.205

7.  X-ray-Based Techniques to Study the Nano-Bio Interface.

Authors:  Carlos Sanchez-Cano; Ramon A Alvarez-Puebla; John M Abendroth; Tobias Beck; Robert Blick; Yuan Cao; Frank Caruso; Indranath Chakraborty; Henry N Chapman; Chunying Chen; Bruce E Cohen; Andre L C Conceição; David P Cormode; Daxiang Cui; Kenneth A Dawson; Gerald Falkenberg; Chunhai Fan; Neus Feliu; Mingyuan Gao; Elisabetta Gargioni; Claus-C Glüer; Florian Grüner; Moustapha Hassan; Yong Hu; Yalan Huang; Samuel Huber; Nils Huse; Yanan Kang; Ali Khademhosseini; Thomas F Keller; Christian Körnig; Nicholas A Kotov; Dorota Koziej; Xing-Jie Liang; Beibei Liu; Sijin Liu; Yang Liu; Ziyao Liu; Luis M Liz-Marzán; Xiaowei Ma; Andres Machicote; Wolfgang Maison; Adrian P Mancuso; Saad Megahed; Bert Nickel; Ferdinand Otto; Cristina Palencia; Sakura Pascarelli; Arwen Pearson; Oula Peñate-Medina; Bing Qi; Joachim Rädler; Joseph J Richardson; Axel Rosenhahn; Kai Rothkamm; Michael Rübhausen; Milan K Sanyal; Raymond E Schaak; Heinz-Peter Schlemmer; Marius Schmidt; Oliver Schmutzler; Theo Schotten; Florian Schulz; A K Sood; Kathryn M Spiers; Theresa Staufer; Dominik M Stemer; Andreas Stierle; Xing Sun; Gohar Tsakanova; Paul S Weiss; Horst Weller; Fabian Westermeier; Ming Xu; Huijie Yan; Yuan Zeng; Ying Zhao; Yuliang Zhao; Dingcheng Zhu; Ying Zhu; Wolfgang J Parak
Journal:  ACS Nano       Date:  2021-03-02       Impact factor: 15.881

Review 8.  X-ray fluorescence imaging of metals and metalloids in biological systems.

Authors:  Run Zhang; Li Li; Yasmina Sultanbawa; Zhi Ping Xu
Journal:  Am J Nucl Med Mol Imaging       Date:  2018-06-05

Review 9.  Synchrotron-Based X-Ray Fluorescence Microscopy as a Technique for Imaging of Elements in Plants.

Authors:  Peter M Kopittke; Tracy Punshon; David J Paterson; Ryan V Tappero; Peng Wang; F Pax C Blamey; Antony van der Ent; Enzo Lombi
Journal:  Plant Physiol       Date:  2018-08-14       Impact factor: 8.340

10.  Epidermal growth factor receptor targeted nuclear delivery and high-resolution whole cell X-ray imaging of Fe3O4@TiO2 nanoparticles in cancer cells.

Authors:  Ye Yuan; Si Chen; Tatjana Paunesku; Sophie Charlotte Gleber; William C Liu; Caroline B Doty; Rachel Mak; Junjing Deng; Qiaoling Jin; Barry Lai; Keith Brister; Claus Flachenecker; Chris Jacobsen; Stefan Vogt; Gayle E Woloschak
Journal:  ACS Nano       Date:  2013-11-27       Impact factor: 15.881

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