Literature DB >> 23913258

3D spectral imaging with synchrotron Fourier transform infrared spectro-microtomography.

Michael C Martin1, Charlotte Dabat-Blondeau, Miriam Unger, Julia Sedlmair, Dilworth Y Parkinson, Hans A Bechtel, Barbara Illman, Jonathan M Castro, Marco Keiluweit, David Buschke, Brenda Ogle, Michael J Nasse, Carol J Hirschmugl.   

Abstract

We report Fourier transform infrared spectro-microtomography, a nondestructive three-dimensional imaging approach that reveals the distribution of distinctive chemical compositions throughout an intact biological or materials sample. The method combines mid-infrared absorption contrast with computed tomographic data acquisition and reconstruction to enhance chemical and morphological localization by determining a complete infrared spectrum for every voxel (millions of spectra determined per sample).

Mesh：

Year:  2013        PMID： 23913258     DOI： 10.1038/nmeth.2596

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


  26 in total

1.  Fourier transform infrared spectrochemical imaging: review of design and applications with a focal plane array and multiple beam synchrotron radiation source.

Authors:  Carol J Hirschmugl; Kathleen M Gough
Journal:  Appl Spectrosc       Date:  2012-05       Impact factor: 2.388

2.  Quantitative 3D elemental microtomography of Cyclotella meneghiniana at 400-nm resolution.

Authors:  Martin D de Jonge; Christian Holzner; Stephen B Baines; Benjamin S Twining; Konstantin Ignatyev; Julia Diaz; Daryl L Howard; Daniel Legnini; Antonino Miceli; Ian McNulty; Chris J Jacobsen; Stefan Vogt
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-18       Impact factor: 11.205

3.  Establishment of an Experimental System for the Study of Tracheary Element Differentiation from Single Cells Isolated from the Mesophyll of Zinnia elegans.

Authors:  H Fukuda; A Komamine
Journal:  Plant Physiol       Date:  1980-01       Impact factor: 8.340

4.  Spatial resolution limits for synchrotron-based spectromicroscopy in the mid- and near-infrared.

Authors:  Erika Levenson; Philippe Lerch; Michael C Martin
Journal:  J Synchrotron Radiat       Date:  2008-05-08       Impact factor: 2.616

5.  Grouped-coordinate ascent algorithms for penalized-likelihood transmission image reconstruction.

Authors:  J A Fessler; E P Ficaro; N H Clinthorne; K Lange
Journal:  IEEE Trans Med Imaging       Date:  1997-04       Impact factor: 10.048

6.  Ordered subsets algorithms for transmission tomography.

Authors:  H Erdogan; J A Fessler
Journal:  Phys Med Biol       Date:  1999-11       Impact factor: 3.609

7.  Biochemical label-free tissue imaging with subcellular-resolution synchrotron FTIR with focal plane array detector.

Authors:  M Z Kastyak-Ibrahim; M J Nasse; M Rak; C Hirschmugl; M R Del Bigio; B C Albensi; K M Gough
Journal:  Neuroimage       Date:  2011-12-16       Impact factor: 6.556

8.  High-resolution Fourier-transform infrared chemical imaging with multiple synchrotron beams.

Authors:  Michael J Nasse; Michael J Walsh; Eric C Mattson; Ruben Reininger; André Kajdacsy-Balla; Virgilia Macias; Rohit Bhargava; Carol J Hirschmugl
Journal:  Nat Methods       Date:  2011-03-20       Impact factor: 28.547

9.  Lysophosphatidic acid inhibits neuronal differentiation of neural stem/progenitor cells derived from human embryonic stem cells.

Authors:  Mirella Dottori; Jessie Leung; Ann M Turnley; Alice Pébay
Journal:  Stem Cells       Date:  2008-02-28       Impact factor: 6.277

10.  Infrared spectral imaging as a novel approach for histopathological recognition in colon cancer diagnosis.

Authors:  Jayakrupakar Nallala; Cyril Gobinet; Marie-Danièle Diebold; Valérie Untereiner; Olivier Bouché; Michel Manfait; Ganesh Dhruvananda Sockalingum; Olivier Piot
Journal:  J Biomed Opt       Date:  2012-11       Impact factor: 3.170
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  16 in total

1.  Ultrafast 2D IR microscopy.

Authors:  Carlos R Baiz; Denise Schach; Andrei Tokmakoff
Journal:  Opt Express       Date:  2014-07-28       Impact factor: 3.894

2.  Mitigating fringing in discrete frequency infrared imaging using time-delayed integration.

Authors:  Shihao Ran; Sebastian Berisha; Rupali Mankar; Wei-Chuan Shih; David Mayerich
Journal:  Biomed Opt Express       Date:  2018-01-26       Impact factor: 3.732

3.  Field-resolved infrared spectroscopy of biological systems.

Authors:  Ioachim Pupeza; Marinus Huber; Michael Trubetskov; Wolfgang Schweinberger; Syed A Hussain; Christina Hofer; Kilian Fritsch; Markus Poetzlberger; Lenard Vamos; Ernst Fill; Tatiana Amotchkina; Kosmas V Kepesidis; Alexander Apolonski; Nicholas Karpowicz; Vladimir Pervak; Oleg Pronin; Frank Fleischmann; Abdallah Azzeer; Mihaela Žigman; Ferenc Krausz
Journal:  Nature       Date:  2020-01-01       Impact factor: 49.962

Review 4.  Infrared Spectroscopic Imaging Advances as an Analytical Technology for Biomedical Sciences.

Authors:  Tomasz P Wrobel; Rohit Bhargava
Journal:  Anal Chem       Date:  2018-02-06       Impact factor: 6.986

5.  Chemical structure and morphology of dorsal root ganglion neurons from naive and inflamed mice.

Authors:  Marie E Barabas; Eric C Mattson; Ebrahim Aboualizadeh; Carol J Hirschmugl; Cheryl L Stucky
Journal:  J Biol Chem       Date:  2014-09-30       Impact factor: 5.157

6.  Rapid chemically selective 3D imaging in the mid-infrared.

Authors:  Eric O Potma; David Knez; Yong Chen; Yulia Davydova; Amanda Durkin; Alexander Fast; Mihaela Balu; Brenna Norton-Baker; Rachel W Martin; Tommaso Baldacchini; Dmitry A Fishman
Journal:  Optica       Date:  2021-07-07       Impact factor: 11.104

7.  Spatially Resolved Two-Dimensional Infrared Spectroscopy via Wide-Field Microscopy.

Authors:  Joshua S Ostrander; Arnaldo L Serrano; Ayanjeet Ghosh; Martin T Zanni
Journal:  ACS Photonics       Date:  2016-06-10       Impact factor: 7.529

Review 8.  Opportunities for live cell FT-infrared imaging: macromolecule identification with 2D and 3D localization.

Authors:  Eric C Mattson; Ebrahim Aboualizadeh; Marie E Barabas; Cheryl L Stucky; Carol J Hirschmugl
Journal:  Int J Mol Sci       Date:  2013-11-19       Impact factor: 5.923

9.  High-definition Fourier Transform Infrared (FT-IR) spectroscopic imaging of human tissue sections towards improving pathology.

Authors:  Hari Sreedhar; Vishal K Varma; Peter L Nguyen; Bennett Davidson; Sanjeev Akkina; Grace Guzman; Suman Setty; Andre Kajdacsy-Balla; Michael J Walsh
Journal:  J Vis Exp       Date:  2015-01-21       Impact factor: 1.355

Review 10.  Applications of Micro-Fourier Transform Infrared Spectroscopy (FTIR) in the Geological Sciences--A Review.

Authors:  Yanyan Chen; Caineng Zou; Maria Mastalerz; Suyun Hu; Carley Gasaway; Xiaowan Tao
Journal:  Int J Mol Sci       Date:  2015-12-18       Impact factor: 5.923
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