Literature DB >> 20700828

A Spin System Labeled and Highly Resolved ed-H(CCO)NH-TOCSY Experiment for the Facilitated Assignment of Proton Side Chains in Partially Deuterated Samples.

R M Gschwind1, G Gemmecker, H Kessler.   

Abstract

The introduction of deuterated and partially deuterated protein samples has greatly facilitated the 13C assignment of larger proteins. Here we present a new version of the HC(CO)NH-TOCSY experiment, the ed-H(CCO)NH-TOCSY experiment for partially deuterated samples, introducing a multi-quantum proton evolution period. This approach removes the main relaxation source (the dipolar coupling to the directly bound 13C spin) and leads to a significant reduction of the proton and carbon relaxation rates. Thus, the indirect proton dimension can be acquired with high resolution, combined with a phase labeling of the proton resonances according to the C-C spin system topology. This editing scheme, independent of the CHn multiplicity, allows to distinguish between proton side-chain positions occurring within a narrow chemical shift range. Therefore this new experiment facilitates the assignment of the proton chemical shifts of partially deuterated samples even of high molecular weights, as demonstrated on a 31 kDa protein.

Entities:  

Year:  1998        PMID: 20700828     DOI: 10.1023/A:1008233703362

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  21 in total

1.  An approach to global fold determination using limited NMR data from larger proteins selectively protonated at specific residue types.

Authors:  B O Smith; Y Ito; A Raine; S Teichmann; L Ben-Tovim; D Nietlispach; R W Broadhurst; T Terada; M Kelly; H Oschkinat; T Shibata; S Yokoyama; E D Laue
Journal:  J Biomol NMR       Date:  1996-10       Impact factor: 2.835

2.  Phase labeling of C-H and C-C spin-system topologies: application in PFG-HACANH and PFG-HACA(CO)NH triple-resonance experiments for determining backbone resonance assignments in proteins.

Authors:  W Feng; C B Rios; G T Montelione
Journal:  J Biomol NMR       Date:  1996-07       Impact factor: 2.835

3.  The use of heteronuclear cross-polarization for backbone assignment of (2)H-, (15)N- and (13)C-labeled proteins: A pulse scheme for triple-resonance 4D correlation of sequential amide protons and (15)N.

Authors:  M Shirakawa; M Wälchli; M Shimizu; Y Kyogoku
Journal:  J Biomol NMR       Date:  1995-04       Impact factor: 2.835

4.  Application of multiple-quantum line narrowing with simultaneous 1H and 13C constant-time scalar-coupling evolution in PFG-HACANH and PFG-HACA(CO)NH triple-resonance experiments.

Authors:  G V Swapna; C B Rios; Z Shang; G T Montelione
Journal:  J Biomol NMR       Date:  1997-01       Impact factor: 2.835

5.  Enhanced sensitivity of rapidly exchanging amide protons by improved phase cycling and the constructive use of radiation damping.

Authors:  W Jahnke; H Kessler
Journal:  J Biomol NMR       Date:  1994-09       Impact factor: 2.835

6.  Phase labeling of C-H and C-C spin-system topologies: application in constant-time PFG-CBCA(CO)NH experiments for discriminating amino acid spin-system types.

Authors:  C B Rios; W Feng; M Tashiro; Z Shang; G T Montelione
Journal:  J Biomol NMR       Date:  1996-10       Impact factor: 2.835

7.  Spin-locked multiple quantum coherence for signal enhancement in heteronuclear multidimensional NMR experiments.

Authors:  S Grzesiek; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

8.  Side chain and backbone assignments in isotopically labeled proteins from two heteronuclear triple resonance experiments.

Authors:  T M Logan; E T Olejniczak; R X Xu; S W Fesik
Journal:  FEBS Lett       Date:  1992-12-21       Impact factor: 4.124

9.  Classification of amino acid spin systems using PFG HCC(CO)NH-TOCSY with constant-time aliphatic 13C frequency labeling.

Authors:  M Tashiro; C B Rios; G T Montelione
Journal:  J Biomol NMR       Date:  1995-09       Impact factor: 2.835

10.  Mannose transporter of Escherichia coli. Backbone assignments and secondary structure of the IIA domain of the IIABMan subunit.

Authors:  S Seip; J Balbach; S Behrens; H Kessler; K Flükiger; R de Meyer; B Erni
Journal:  Biochemistry       Date:  1994-06-14       Impact factor: 3.162

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  3 in total

1.  Efficient side-chain and backbone assignment in large proteins: application to tGCN5.

Authors:  Y Lin; G Wagner
Journal:  J Biomol NMR       Date:  1999-11       Impact factor: 2.835

2.  Mixed-time parallel evolution in multiple quantum NMR experiments: sensitivity and resolution enhancement in heteronuclear NMR.

Authors:  Jinfa Ying; Jordan H Chill; John M Louis; Ad Bax
Journal:  J Biomol NMR       Date:  2007-01-24       Impact factor: 2.835

3.  Heteronuclear relayed E.COSY revisited: determination of 3J(H(alpha),C(gamma)) couplings in Asx and aromatic residues in proteins.

Authors:  F Löhr; C Pérez; R Köhler; H Rüterjans; J M Schmidt
Journal:  J Biomol NMR       Date:  2000-09       Impact factor: 2.835

  3 in total

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