Literature DB >> 8589609

Classification of amino acid spin systems using PFG HCC(CO)NH-TOCSY with constant-time aliphatic 13C frequency labeling.

M Tashiro1, C B Rios, G T Montelione.   

Abstract

We have developed a useful strategy for identifying amino acid spin systems and side-chain carbon resonance assignments in small 15N-, 13C-enriched proteins. Multidimensional constant-time pulsed field gradient (PFG) HCC(CO)NH-TOCSY experiments provide side-chain resonance frequency information and establish connectivities between sequential amino acid spin systems. In PFG HCC(CO)NH-TOCSY experiments recorded with a properly tuned constant-time period for frequency labeling of aliphatic 13C resonances, phases of cross peaks provide information that is useful for identifying spin system types. When combined with 13C chemical shift information, these patterns allow identification of the following spin system types: Gly, Ala, Thr, Val, Leu, Ile, Lys, Arg, Pro, long-type (i.e., Gln, Glu and Met), Ser, and AMX-type (i.e., Asp, Asn, Cys, His, Phe, Trp and Tyr).

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Year:  1995        PMID: 8589609     DOI: 10.1007/bf00211785

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  8 in total

1.  A synthetic IgG-binding domain based on staphylococcal protein A.

Authors:  B Nilsson; T Moks; B Jansson; L Abrahmsén; A Elmblad; E Holmgren; C Henrichson; T A Jones; M Uhlén
Journal:  Protein Eng       Date:  1987 Feb-Mar

Review 2.  Automated analysis of nuclear magnetic resonance assignments for proteins.

Authors:  D E Zimmerman; G T Montelione
Journal:  Curr Opin Struct Biol       Date:  1995-10       Impact factor: 6.809

3.  An improved strategy for determining resonance assignments for isotopically enriched proteins and its application to an engineered domain of staphylococcal protein A.

Authors:  B A Lyons; M Tashiro; L Cedergren; B Nilsson; G T Montelione
Journal:  Biochemistry       Date:  1993-08-10       Impact factor: 3.162

4.  An efficient triple-resonance experiment for proton-directed sequential backbone assignment of medium-sized proteins.

Authors:  A C Wang; P J Lodi; J Qin; G W Vuister; A M Gronenborn; G M Clore
Journal:  J Magn Reson B       Date:  1994-10

5.  Side chain and backbone assignments in isotopically labeled proteins from two heteronuclear triple resonance experiments.

Authors:  T M Logan; E T Olejniczak; R X Xu; S W Fesik
Journal:  FEBS Lett       Date:  1992-12-21       Impact factor: 4.124

6.  Amino acid type determination in the sequential assignment procedure of uniformly 13C/15N-enriched proteins.

Authors:  S Grzesiek; A Bax
Journal:  J Biomol NMR       Date:  1993-03       Impact factor: 2.835

7.  A general method for assigning NMR spectra of denatured proteins using 3D HC(CO)NH-TOCSY triple resonance experiments.

Authors:  T M Logan; E T Olejniczak; R X Xu; S W Fesik
Journal:  J Biomol NMR       Date:  1993-03       Impact factor: 2.835

8.  A general enhancement scheme in heteronuclear multidimensional NMR employing pulsed field gradients.

Authors:  J Schleucher; M Schwendinger; M Sattler; P Schmidt; O Schedletzky; S J Glaser; O W Sørensen; C Griesinger
Journal:  J Biomol NMR       Date:  1994-03       Impact factor: 2.835

  8 in total
  5 in total

1.  CASA: an efficient automated assignment of protein mainchain NMR data using an ordered tree search algorithm.

Authors:  Jianyong Wang; Tianzhi Wang; Erik R P Zuiderweg; Gordon M Crippen
Journal:  J Biomol NMR       Date:  2005-12       Impact factor: 2.835

2.  Amino-acid type identification in 15N-HSQC spectra by combinatorial selective 15N-labelling.

Authors:  Peter S C Wu; Kiyoshi Ozawa; Slobodan Jergic; Xun-Cheng Su; Nicholas E Dixon; Gottfried Otting
Journal:  J Biomol NMR       Date:  2006-01       Impact factor: 2.835

3.  Phase labeling of C-H and C-C spin-system topologies: application in PFG-HACANH and PFG-HACA(CO)NH triple-resonance experiments for determining backbone resonance assignments in proteins.

Authors:  W Feng; C B Rios; G T Montelione
Journal:  J Biomol NMR       Date:  1996-07       Impact factor: 2.835

4.  A Spin System Labeled and Highly Resolved ed-H(CCO)NH-TOCSY Experiment for the Facilitated Assignment of Proton Side Chains in Partially Deuterated Samples.

Authors:  R M Gschwind; G Gemmecker; H Kessler
Journal:  J Biomol NMR       Date:  1998-02       Impact factor: 2.835

5.  Phase labeling of C-H and C-C spin-system topologies: application in constant-time PFG-CBCA(CO)NH experiments for discriminating amino acid spin-system types.

Authors:  C B Rios; W Feng; M Tashiro; Z Shang; G T Montelione
Journal:  J Biomol NMR       Date:  1996-10       Impact factor: 2.835

  5 in total

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