Literature DB >> 20694505

Facile measurement of ¹H-¹5N residual dipolar couplings in larger perdeuterated proteins.

Nicholas C Fitzkee1, Ad Bax.   

Abstract

We present a simple method, ARTSY, for extracting ¹J(NH) couplings and ¹H-¹⁵N RDCs from an interleaved set of two-dimensional ¹H-¹⁵N TROSY-HSQC spectra, based on the principle of quantitative J correlation. The primary advantage of the ARTSY method over other methods is the ability to measure couplings without scaling peak positions or altering the narrow line widths characteristic of TROSY spectra. Accuracy of the method is demonstrated for the model system GB3. Application to the catalytic core domain of HIV integrase, a 36 kDa homodimer with unfavorable spectral characteristics, demonstrates its practical utility. Precision of the RDC measurement is limited by the signal-to-noise ratio, S/N, achievable in the 2D TROSY-HSQC spectrum, and is approximately given by 30/(S/N) Hz.

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Year:  2010        PMID: 20694505      PMCID: PMC2950907          DOI: 10.1007/s10858-010-9441-9

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  33 in total

1.  Evaluation of cross-correlation effects and measurement of one-bond couplings in proteins with short transverse relaxation times.

Authors:  G Kontaxis; G M Clore; A Bax
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Authors:  Ad Bax; Alexander Grishaev
Journal:  Curr Opin Struct Biol       Date:  2005-10       Impact factor: 6.809

Review 3.  NMR residual dipolar couplings as probes of biomolecular dynamics.

Authors:  Joel R Tolman; Ke Ruan
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4.  Three new structures of the core domain of HIV-1 integrase: an active site that binds magnesium.

Authors:  Y Goldgur; F Dyda; A B Hickman; T M Jenkins; R Craigie; D R Davies
Journal:  Proc Natl Acad Sci U S A       Date:  1998-08-04       Impact factor: 11.205

Review 5.  Measurement of J and dipolar couplings from simplified two-dimensional NMR spectra.

Authors:  M Ottiger; F Delaglio; A Bax
Journal:  J Magn Reson       Date:  1998-04       Impact factor: 2.229

6.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

7.  Simultaneous measurement of protein one-bond residual dipolar couplings without increased resonance overlap.

Authors:  Vinesh Vijayan; Markus Zweckstetter
Journal:  J Magn Reson       Date:  2005-06       Impact factor: 2.229

8.  Single Transition-to-single Transition Polarization Transfer (ST2-PT) in [15N,1H]-TROSY.

Authors:  K V Pervushin; G Wider; K Wüthrich
Journal:  J Biomol NMR       Date:  1998-08       Impact factor: 2.835

9.  Pulse sequences for measurement of one-bond (15)N-(1)H coupling constants in the protein backbone.

Authors:  M H Lerche; A Meissner; F M Poulsen; O W Sørensen
Journal:  J Magn Reson       Date:  1999-09       Impact factor: 2.229

10.  Measurement and interpretation of 15N-1H residual dipolar couplings in larger proteins.

Authors:  Akash Bhattacharya; Matthew Revington; Erik R P Zuiderweg
Journal:  J Magn Reson       Date:  2009-11-26       Impact factor: 2.229

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  48 in total

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Authors:  Lalit Deshmukh; John M Louis; Rodolfo Ghirlando; G Marius Clore
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5.  NMR Investigation of Structures of G-protein Coupled Receptor Folding Intermediates.

Authors:  Martin Poms; Philipp Ansorge; Luis Martinez-Gil; Simon Jurt; Daniel Gottstein; Katrina E Fracchiolla; Leah S Cohen; Peter Güntert; Ismael Mingarro; Fred Naider; Oliver Zerbe
Journal:  J Biol Chem       Date:  2016-11-18       Impact factor: 5.157

6.  Measurement of (1)H-(15)N and (1)H-(13)C residual dipolar couplings in nucleic acids from TROSY intensities.

Authors:  Jinfa Ying; Jinbu Wang; Alex Grishaev; Ping Yu; Yun-Xing Wang; Ad Bax
Journal:  J Biomol NMR       Date:  2011-09-27       Impact factor: 2.835

7.  Solution NMR Experiment for Measurement of (15)N-(1)H Residual Dipolar Couplings in Large Proteins and Supramolecular Complexes.

Authors:  Alexander Eletsky; Surya V S R K Pulavarti; Victor Beaumont; Paul Gollnick; Thomas Szyperski
Journal:  J Am Chem Soc       Date:  2015-08-27       Impact factor: 15.419

8.  The structure of mouse cytomegalovirus m04 protein obtained from sparse NMR data reveals a conserved fold of the m02-m06 viral immune modulator family.

Authors:  Nikolaos G Sgourakis; Kannan Natarajan; Jinfa Ying; Beat Vogeli; Lisa F Boyd; David H Margulies; Ad Bax
Journal:  Structure       Date:  2014-08-07       Impact factor: 5.006

9.  Pressure-induced structural transition of mature HIV-1 protease from a combined NMR/MD simulation approach.

Authors:  Julien Roche; John M Louis; Ad Bax; Robert B Best
Journal:  Proteins       Date:  2015-10-16

10.  Active Site Breathing of Human Alkbh5 Revealed by Solution NMR and Accelerated Molecular Dynamics.

Authors:  Jeffrey A Purslow; Trang T Nguyen; Timothy K Egner; Rochelle R Dotas; Balabhadra Khatiwada; Vincenzo Venditti
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