Literature DB >> 2068095

Rapid determination of nucleotides that define tRNA(Gly) acceptor identity.

W H McClain1, K Foss, R A Jenkins, J Schneider.   

Abstract

Expression of the genetic code depends on the recognition of specific tRNAs by the enzymes that aminoacylate them. A computer comparison of tRNA sequences coupled with analysis of mutant nonsense-suppressor tRNAs has revealed the structural features that distinguish the acceptor identity of Escherichia coli tRNA(Gly) from tRNAs that accept phenylalanine, arginine, lysine, and glutamine. On replacement of several nucleotides in the acceptor stem and anticodon of the latter tRNAs with tRNA(Gly)-derived residues, the resulting molecules acquired a tRNA(Gly) identity.

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Year:  1991        PMID： 2068095      PMCID： PMC52039          DOI： 10.1073/pnas.88.14.6147

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  21 in total

1.  Nucleotides in yeast tRNAPhe required for the specific recognition by its cognate synthetase.

Authors:  J R Sampson; A B DiRenzo; L S Behlen; O C Uhlenbeck
Journal:  Science       Date:  1989-03-10       Impact factor: 47.728

2.  Conversion of aminoacylation specificity from tRNA(Tyr) to tRNA(Ser) in vitro.

Authors:  H Himeno; T Hasegawa; T Ueda; K Watanabe; M Shimizu
Journal:  Nucleic Acids Res       Date:  1990-12-11       Impact factor: 16.971

3.  Anticodon switching changes the identity of methionine and valine transfer RNAs.

Authors:  L H Schulman; H Pelka
Journal:  Science       Date:  1988-11-04       Impact factor: 47.728

4.  Compilation of tRNA sequences and sequences of tRNA genes.

Authors:  M Sprinzl; T Hartmann; J Weber; J Blank; R Zeidler
Journal:  Nucleic Acids Res       Date:  1989       Impact factor: 16.971

5.  Accuracy of in vivo aminoacylation requires proper balance of tRNA and aminoacyl-tRNA synthetase.

Authors:  R Swanson; P Hoben; M Sumner-Smith; H Uemura; L Watson; D Söll
Journal:  Science       Date:  1988-12-16       Impact factor: 47.728

6.  A simple structural feature is a major determinant of the identity of a transfer RNA.

Authors:  Y M Hou; P Schimmel
Journal:  Nature       Date:  1988-05-12       Impact factor: 49.962

7.  Structure of E. coli glutaminyl-tRNA synthetase complexed with tRNA(Gln) and ATP at 2.8 A resolution.

Authors:  M A Rould; J J Perona; D Söll; T A Steitz
Journal:  Science       Date:  1989-12-01       Impact factor: 47.728

8.  Conditionally lethal and recessive UGA-suppressor mutations in the prfB gene encoding peptide chain release factor 2 of Escherichia coli.

Authors:  K Kawakami; T Inada; Y Nakamura
Journal:  J Bacteriol       Date:  1988-11       Impact factor: 3.490

9.  Changing the acceptor identity of a transfer RNA by altering nucleotides in a "variable pocket".

Authors:  W H McClain; K Foss
Journal:  Science       Date:  1988-09-30       Impact factor: 47.728

10.  Nucleotides that contribute to the identity of Escherichia coli tRNA(Phe).

Authors:  W H McClain; K Foss
Journal:  J Mol Biol       Date:  1988-08-20       Impact factor: 5.469
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  25 in total

1.  Anticodon-independent aminoacylation of an RNA minihelix with valine.

Authors:  M Frugier; C Florentz; R Giegé
Journal:  Proc Natl Acad Sci U S A       Date:  1992-05-01       Impact factor: 11.205

2.  Surprising contribution to aminoacylation and translation of non-Watson-Crick pairs in tRNA.

Authors:  William H McClain
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-14       Impact factor: 11.205

3.  Four sites in the acceptor helix and one site in the variable pocket of tRNA(Ala) determine the molecule's acceptor identity.

Authors:  W H McClain; K Foss; R A Jenkins; J Schneider
Journal:  Proc Natl Acad Sci U S A       Date:  1991-10-15       Impact factor: 11.205

4.  X-ray diffraction analysis of a human tRNA(Gly) acceptor-stem microhelix isoacceptor at 1.18 A resolution.

Authors:  André Eichert; Markus Perbandt; Angela Schreiber; Jens P Fürste; Christian Betzel; Volker A Erdmann; Charlotte Förster
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-12-25

5.  Polynucleotide phosphorylase hinders mRNA degradation upon ribosomal protein S1 overexpression in Escherichia coli.

Authors:  Federica Briani; Serena Curti; Francesca Rossi; Thomas Carzaniga; Pierluigi Mauri; Gianni Dehò
Journal:  RNA       Date:  2008-09-29       Impact factor: 4.942

6.  RNA editing changes the identity of a mitochondrial tRNA in marsupials.

Authors:  G V Börner; M Mörl; A Janke; S Pääbo
Journal:  EMBO J       Date:  1996-11-01       Impact factor: 11.598

7.  Specific function of a G.U wobble pair from an adjacent helical site in tRNA(Ala) during recognition by alanyl-tRNA synthetase.

Authors:  W H McClain; K Gabriel; J Schneider
Journal:  RNA       Date:  1996-02       Impact factor: 4.942

8.  Spiroplasma citri UGG and UGA tryptophan codons: sequence of the two tryptophanyl-tRNAs and organization of the corresponding genes.

Authors:  C Citti; L Maréchal-Drouard; C Saillard; J H Weil; J M Bové
Journal:  J Bacteriol       Date:  1992-10       Impact factor: 3.490

9.  Use of a gene encoding a suppressor tRNA as a reporter of transcription: analyzing the action of the Nun protein of bacteriophage HK022.

Authors:  S B Sloan; R A Weisberg
Journal:  Proc Natl Acad Sci U S A       Date:  1993-11-01       Impact factor: 11.205

Review 10.  Functions of the gene products of Escherichia coli.

Authors:  M Riley
Journal:  Microbiol Rev       Date:  1993-12
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