Literature DB >> 20663480

X-ray diffraction experiment--the last experiment in the structure elucidation process.

Maksymilian Chruszcz1, Dominika Borek, Marcin Domagalski, Zbyszek Otwinowski, Wladek Minor.   

Abstract

Recent years have brought not only an avalanche of new macromolecular structures, but also significant advances in the protein structure determination methodology only now making its way into structure-based drug discovery. In this chapter, we review recent methodology developments in X-ray diffraction experiments that led to fast and very accurate elucidation of three-dimensional structures of macromolecules. We will discuss the role of data collection as the last experiment performed in the crystal structure determination process. A statistical analysis of diffraction experiments that are reported in the Protein Data Bank (PDB) is also presented. Copyright 2009 Elsevier Inc. All rights reserved.

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Year:  2009        PMID: 20663480      PMCID: PMC3128764          DOI: 10.1016/S1876-1623(09)77002-6

Source DB:  PubMed          Journal:  Adv Protein Chem Struct Biol        ISSN: 1876-1623            Impact factor:   3.507


  36 in total

1.  Metalloproteomics: high-throughput structural and functional annotation of proteins in structural genomics.

Authors:  Wuxian Shi; Chenyang Zhan; Alexander Ignatov; Babu A Manjasetty; Nebojsa Marinkovic; Michael Sullivan; Raymond Huang; Mark R Chance
Journal:  Structure       Date:  2005-10       Impact factor: 5.006

2.  Protein production and crystallization at the joint center for structural genomics.

Authors:  Scott A Lesley; Ian A Wilson
Journal:  J Struct Funct Genomics       Date:  2005

Review 3.  Efficient use of synchrotron radiation for macromolecular diffraction data collection.

Authors:  Zbigniew Dauter
Journal:  Prog Biophys Mol Biol       Date:  2005-10       Impact factor: 3.667

4.  Molecular replacement with pseudosymmetry and model dissimilarity: a case study.

Authors:  Mariusz Jaskólski; Mi Li; Gary Laco; Alla Gustchina; Alexander Wlodawer
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-01-18

5.  Large-format imaging plate and weissenberg camera for accurate protein crystallographic data collection using synchrotron radiation.

Authors:  K Sakabe; K Sasaki; N Watanabe; M Suzuki; Z G Wang; J Miyahara; N Sakabe
Journal:  J Synchrotron Radiat       Date:  1997-05-01       Impact factor: 2.616

6.  X-ray imaging with the PILATUS 100k detector.

Authors:  M Bech; O Bunk; C David; P Kraft; C Brönnimann; E F Eikenberry; F Pfeiffer
Journal:  Appl Radiat Isot       Date:  2007-10-22       Impact factor: 1.513

7.  What can be done with a good crystal and an accurate beamline?

Authors:  Jiawei Wang; Miroslawa Dauter; Zbigniew Dauter
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-11-23

8.  Pathological crystallography: case studies of several unusual macromolecular crystals.

Authors:  Zbigniew Dauter; Istvan Botos; Nicole LaRonde-LeBlanc; Alexander Wlodawer
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-06-24

Review 9.  Structural genomics and drug discovery for infectious diseases.

Authors:  W F Anderson
Journal:  Infect Disord Drug Targets       Date:  2009-11

10.  Model preparation in MOLREP and examples of model improvement using X-ray data.

Authors:  Andrey A Lebedev; Alexei A Vagin; Garib N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-12-05
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  4 in total

1.  Recent Force Field Strategies for Intrinsically Disordered Proteins.

Authors:  Junxi Mu; Hao Liu; Jian Zhang; Ray Luo; Hai-Feng Chen
Journal:  J Chem Inf Model       Date:  2021-02-16       Impact factor: 4.956

Review 2.  Unmet challenges of structural genomics.

Authors:  Maksymilian Chruszcz; Marcin Domagalski; Tomasz Osinski; Alexander Wlodawer; Wladek Minor
Journal:  Curr Opin Struct Biol       Date:  2010-08-31       Impact factor: 6.809

Review 3.  100 Years later: Celebrating the contributions of x-ray crystallography to allergy and clinical immunology.

Authors:  Anna Pomés; Maksymilian Chruszcz; Alla Gustchina; Wladek Minor; Geoffrey A Mueller; Lars C Pedersen; Alexander Wlodawer; Martin D Chapman
Journal:  J Allergy Clin Immunol       Date:  2015-07       Impact factor: 10.793

4.  X-ray crystallography: Assessment and validation of protein-small molecule complexes for drug discovery.

Authors:  David R Cooper; Przemyslaw J Porebski; Maksymilian Chruszcz; Wladek Minor
Journal:  Expert Opin Drug Discov       Date:  2011-08-01       Impact factor: 6.098

  4 in total

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