Literature DB >> 17139083

What can be done with a good crystal and an accurate beamline?

Jiawei Wang1, Miroslawa Dauter, Zbigniew Dauter.   

Abstract

X-ray single-wavelength anomalous diffraction (SAD) data from a crystal of proteinase K were collected using synchrotron radiation of 0.98 A wavelength at SER-CAT 22-ID beamline, Advanced Photon Source, Argonne National Laboratory. At this wavelength, the expected Bijvoet ratio resulting from the presence of one calcium, one chloride and ten S atoms in the 279-residue protein is extremely small at approximately 0.46%. The direct-methods program SHELXD located 11 anomalous sites using data truncated to 2 A resolution. SHELXE was used to produce an easily interpretable electron-density map. This study shows that an accurate beamline and a good-quality crystal provide the possibility of successfully using a very weak anomalous signal of sulfur measured at a short wavelength for phasing a protein structure, even if a small degree of radiation damage is present.

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Year:  2006        PMID: 17139083     DOI: 10.1107/S0907444906038534

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  11 in total

1.  On the accuracy of unit-cell parameters in protein crystallography.

Authors:  Zbigniew Dauter; Alexander Wlodawer
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-10-31

2.  Towards a rational approach for heavy-atom derivative screening in protein crystallography.

Authors:  Johnson Agniswamy; M Gordon Joyce; Carl H Hammer; Peter D Sun
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2008-03-19

Review 3.  X-ray diffraction experiment--the last experiment in the structure elucidation process.

Authors:  Maksymilian Chruszcz; Dominika Borek; Marcin Domagalski; Zbyszek Otwinowski; Wladek Minor
Journal:  Adv Protein Chem Struct Biol       Date:  2009-11-28       Impact factor: 3.507

4.  Structure Determination from Lipidic Cubic Phase Embedded Microcrystals by MicroED.

Authors:  Lan Zhu; Guanhong Bu; Liang Jing; Dan Shi; Ming-Yue Lee; Tamir Gonen; Wei Liu; Brent L Nannenga
Journal:  Structure       Date:  2020-07-30       Impact factor: 5.006

5.  The design of macromolecular crystallography diffraction experiments.

Authors:  Gwyndaf Evans; Danny Axford; Robin L Owen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

6.  Serendipitous SAD Solution for DMSO-Soaked SOCS2-ElonginC-ElonginB Crystals Using Covalently Incorporated Dimethylarsenic: Insights into Substrate Receptor Conformational Flexibility in Cullin RING Ligases.

Authors:  Morgan S Gadd; Emil Bulatov; Alessio Ciulli
Journal:  PLoS One       Date:  2015-06-29       Impact factor: 3.240

7.  Data collection with a tailored X-ray beam size at 2.69 Å wavelength (4.6 keV): sulfur SAD phasing of Cdc23(Nterm).

Authors:  Michele Cianci; Matthew R Groves; David Barford; Thomas R Schneider
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-03-01       Impact factor: 7.652

8.  Rapid cadmium SAD phasing at the standard wavelength (1 Å).

Authors:  Saravanan Panneerselvam; Esa Pekka Kumpula; Inari Kursula; Anja Burkhardt; Alke Meents
Journal:  Acta Crystallogr D Struct Biol       Date:  2017-06-30       Impact factor: 7.652

9.  A Workflow for Protein Structure Determination From Thin Crystal Lamella by Micro-Electron Diffraction.

Authors:  Emma V Beale; David G Waterman; Corey Hecksel; Jason van Rooyen; James B Gilchrist; James M Parkhurst; Felix de Haas; Bart Buijsse; Gwyndaf Evans; Peijun Zhang
Journal:  Front Mol Biosci       Date:  2020-08-04

10.  Likelihood-based estimation of substructure content from single-wavelength anomalous diffraction (SAD) intensity data.

Authors:  Kaushik S Hatti; Airlie J McCoy; Randy J Read
Journal:  Acta Crystallogr D Struct Biol       Date:  2021-06-18       Impact factor: 7.652

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