Literature DB >> 15983420

Pathological crystallography: case studies of several unusual macromolecular crystals.

Zbigniew Dauter1, Istvan Botos, Nicole LaRonde-LeBlanc, Alexander Wlodawer.   

Abstract

Although macromolecular crystallography is rapidly becoming largely routine owing to advances in methods of data collection, structure solution and refinement, difficult cases are still common. To remind structural biologists about the kinds of crystallographic difficulties that might be encountered, case studies of several successfully completed structure determinations that utilized less than perfect crystals are discussed here. The structure of the proteolytic domain of Archaeoglobus fulgidus Lon was solved with crystals that contained superimposed orthorhombic and monoclinic lattices, a case not previously described for proteins. Another hexagonal crystal form of this protein exhibited an unusually high degree of non-isomorphism. Crystals of A. fulgidus Rio1 kinase exhibited both pseudosymmetry and twinning. Ways of identifying the observed phenomena and approaches to solving and refining macromolecular structures when only less than perfect crystals are available are discussed here.

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Year:  2005        PMID: 15983420     DOI: 10.1107/S0907444905011285

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  13 in total

1.  Rotational order-disorder structure of fluorescent protein FP480.

Authors:  Sergei Pletnev; Kateryna S Morozova; Vladislav V Verkhusha; Zbigniew Dauter
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-08-06

2.  A case of structure determination using pseudosymmetry.

Authors:  Sergei Radaev; Johnson Agniswamy; Peter D Sun
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-11-17

3.  Identification of patterns in diffraction intensities affected by radiation exposure.

Authors:  Dominika Borek; Zbigniew Dauter; Zbyszek Otwinowski
Journal:  J Synchrotron Radiat       Date:  2012-12-06       Impact factor: 2.616

4.  The rotational order-disorder structure of the reversibly photoswitchable red fluorescent protein rsTagRFP.

Authors:  Sergei Pletnev; Fedor V Subach; Vladislav V Verkhusha; Zbigniew Dauter
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-12-24

5.  Characterizing pathological imperfections in macromolecular crystals: lattice disorders and modulations.

Authors:  Jeffrey J Lovelace; Gloria E O Borgstahl
Journal:  Crystallogr Rev       Date:  2019-12-10       Impact factor: 2.467

6.  Crystal structures of inhibitor complexes of human T-cell leukemia virus (HTLV-1) protease.

Authors:  Tadashi Satoh; Mi Li; Jeffrey-Tri Nguyen; Yoshiaki Kiso; Alla Gustchina; Alexander Wlodawer
Journal:  J Mol Biol       Date:  2010-06-30       Impact factor: 5.469

Review 7.  X-ray diffraction experiment--the last experiment in the structure elucidation process.

Authors:  Maksymilian Chruszcz; Dominika Borek; Marcin Domagalski; Zbyszek Otwinowski; Wladek Minor
Journal:  Adv Protein Chem Struct Biol       Date:  2009-11-28       Impact factor: 3.507

Review 8.  Structure and the Mode of Activity of Lon Proteases from Diverse Organisms.

Authors:  Alexander Wlodawer; Bartosz Sekula; Alla Gustchina; Tatyana V Rotanova
Journal:  J Mol Biol       Date:  2022-02-17       Impact factor: 6.151

9.  Limited proteolysis of E. coli ATP-dependent protease Lon - a unified view of the subunit architecture and characterization of isolated enzyme fragments.

Authors:  Edward E Melnikov; Anna G Andrianova; Andrey D Morozkin; Anton A Stepnov; Oksana V Makhovskaya; Istvan Botos; Alla Gustchina; Alexander Wlodawer; Tatyana V Rotanova
Journal:  Acta Biochim Pol       Date:  2008-05-26       Impact factor: 2.149

Review 10.  Protein crystallography for aspiring crystallographers or how to avoid pitfalls and traps in macromolecular structure determination.

Authors:  Alexander Wlodawer; Wladek Minor; Zbigniew Dauter; Mariusz Jaskolski
Journal:  FEBS J       Date:  2013-09-18       Impact factor: 5.542

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