Literature DB >> 2062832

Observation of the light-triggered binding of pyrone to chymotrypsin by Laue x-ray crystallography.

B L Stoddard1, P Koenigs, N Porter, K Petratos, G A Petsko, D Ringe.   

Abstract

Crystals of gamma-chymotrypsin inhibited with the photodissociable group trans-p-diethylamino-o-hydroxy-alpha-methylcinnamate were irradiated with a 1-msec flash from a high-energy xenon flashlamp in the presence of the mechanism-based inhibitor 3-benzyl-6-chloro-2-pyrone. The ensuing reaction was monitored by collection of sequential, single-exposure Laue x-ray diffraction patterns. The experiment was also performed in solution to verify the regeneration of catalytic activity and the subsequent inhibition of the enzyme by pyrone after photolysis. The resulting crystallographic structures show the presence of covalently bound cinnamate prior to photolysis, the generation of "free" enzyme after irradiation of the crystal, and the slow formation of a pyrone-inhibited complex several hours after photolysis. The structure of the free enzyme shows a significant proportion of the active sites in the crystal to contain a naturally occurring, noncovalently bound tetrapeptide inhibitor [Dixon, M.M. & Matthews, B.W. (1989) Biochemistry 28, 7033-7038], even after cinnamate acylation and photolysis. Data collected simultaneously with irradiation show the crystal to be slightly disordered during photolysis, leading to streaked x-ray photos. The resulting maps are suggestive of a bicyclic coumarin species produced by photolysis and deacylation; however, the electron density is difficult to model unambiguously by one unique chemical state. Nevertheless, Laue crystallography is shown to be capable of visualizing time-dependent chemical changes in the active site of an enzyme.

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Year:  1991        PMID: 2062832      PMCID: PMC51905          DOI: 10.1073/pnas.88.13.5503

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  14 in total

1.  X-ray Laue Diffraction from Protein Crystals.

Authors:  K Moffat; D Szebenyi; D Bilderback
Journal:  Science       Date:  1984-03-30       Impact factor: 47.728

Review 2.  Reactivity and cryoenzymology of enzymes in the crystalline state.

Authors:  M W Makinen; A L Fink
Journal:  Annu Rev Biophys Bioeng       Date:  1977

3.  Calcium binding sites in tomato bushy stunt virus visualized by Laue crystallography.

Authors:  J W Campbell; I J Clifton; T J Greenhough; J Hajdu; S C Harrison; R C Liddington; A K Shrive
Journal:  J Mol Biol       Date:  1990-08-05       Impact factor: 5.469

4.  A low cost high intensity flash device for photolysis experiments.

Authors:  G Rapp; K Güth
Journal:  Pflugers Arch       Date:  1988-02       Impact factor: 3.657

5.  Time-resolved X-ray crystallographic study of the conformational change in Ha-Ras p21 protein on GTP hydrolysis.

Authors:  I Schlichting; S C Almo; G Rapp; K Wilson; K Petratos; A Lentfer; A Wittinghofer; W Kabsch; E F Pai; G A Petsko
Journal:  Nature       Date:  1990-05-24       Impact factor: 49.962

6.  X-ray Laue diffraction from crystals of xylose isomerase.

Authors:  G K Farber; P Machin; S C Almo; G A Petsko; J Hajdu
Journal:  Proc Natl Acad Sci U S A       Date:  1988-01       Impact factor: 11.205

7.  Is gamma-chymotrypsin a tetrapeptide acyl-enzyme adduct of alpha-chymotrypsin?

Authors:  M M Dixon; B W Matthews
Journal:  Biochemistry       Date:  1989-08-22       Impact factor: 3.162

8.  Novel inactivators of serine proteases based on 6-chloro-2-pyrone.

Authors:  R B Westkaemper; R H Abeles
Journal:  Biochemistry       Date:  1983-06-21       Impact factor: 3.162

9.  Structure and activity of two photoreversible cinnamates bound to chymotrypsin.

Authors:  B L Stoddard; J Bruhnke; N Porter; D Ringe; G A Petsko
Journal:  Biochemistry       Date:  1990-05-22       Impact factor: 3.162

10.  Catalysis in the crystal: synchrotron radiation studies with glycogen phosphorylase b.

Authors:  J Hajdu; K R Acharya; D I Stuart; P J McLaughlin; D Barford; N G Oikonomakos; H Klein; L N Johnson
Journal:  EMBO J       Date:  1987-02       Impact factor: 11.598

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  5 in total

Review 1.  Time-resolved protein crystallography.

Authors:  L N Johnson
Journal:  Protein Sci       Date:  1992-10       Impact factor: 6.725

2.  Detection of Reaction Intermediates in Mg2+-Dependent DNA Synthesis and RNA Degradation by Time-Resolved X-Ray Crystallography.

Authors:  Nadine L Samara; Yang Gao; Jinjun Wu; Wei Yang
Journal:  Methods Enzymol       Date:  2017-05-03       Impact factor: 1.600

Review 3.  Fleeting opportunities.

Authors:  D Ringe
Journal:  Proc Natl Acad Sci U S A       Date:  1993-03-15       Impact factor: 11.205

Review 4.  Mapping Enzyme Landscapes by Time-Resolved Crystallography with Synchrotron and X-Ray Free Electron Laser Light.

Authors:  Mark A Wilson
Journal:  Annu Rev Biophys       Date:  2021-12-21       Impact factor: 19.763

5.  Laue and monochromatic diffraction studies on catalysis in phosphorylase b crystals.

Authors:  E M Duke; S Wakatsuki; A Hadfield; L N Johnson
Journal:  Protein Sci       Date:  1994-08       Impact factor: 6.725

  5 in total

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