Literature DB >> 2388260

Calcium binding sites in tomato bushy stunt virus visualized by Laue crystallography.

J W Campbell1, I J Clifton, T J Greenhough, J Hajdu, S C Harrison, R C Liddington, A K Shrive.   

Abstract

We have collected Laue diffraction data from crystals of tomato bushy stunt virus using the full white X-ray spectrum from the wiggler magnet of the Synchrotron Radiation Source at Daresbury, U.K. A single 24 second exposure of a crystal soaked in EDTA yielded a data set that was 90% complete between 6 and 3.5 A resolution. A large proportion of the data could be measured using an overlap deconvolution routine to separate spatially overlapping reflections in the dense Laue photograph. Reflections with I greater than 2 sigma I (40% of the data set) were subjected to wavelength normalization. A difference Fourier map between these reflections and a monochromatic native set showed, after icosahedral averaging, the three pairs of Ca2+ binding sites related by quasi-symmetry and the movement of a liganding loop in the protein at the A/C subunit interface. The extent and quality of the data obtained from a single Laue photograph of this virus were thus sufficient to detect clearly such small structural alterations. In a second experiment, a Laue photograph was taken from a crystal that was soaked first in EDTA and then in GdCl3. A difference Fourier map between this Laue data set and the Laue data set from the EDTA-soaked crystal showed clearly the Gd3+ sites in the capsid, demonstrating that the Laue technique is a reliable and efficient means for data collection with virus crystals.

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Year:  1990        PMID: 2388260     DOI: 10.1016/0022-2836(90)90278-T

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  4 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  1991-07-01       Impact factor: 11.205

2.  Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography.

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Journal:  Nature       Date:  2016-11-14       Impact factor: 49.962

3.  A novel virus genome discovered in an extreme environment suggests recombination between unrelated groups of RNA and DNA viruses.

Authors:  Geoffrey S Diemer; Kenneth M Stedman
Journal:  Biol Direct       Date:  2012-06-11       Impact factor: 4.540

4.  Unveiling Crucivirus Diversity by Mining Metagenomic Data.

Authors:  Ignacio de la Higuera; George W Kasun; Ellis L Torrance; Alyssa A Pratt; Amberlee Maluenda; Jonathan Colombet; Maxime Bisseux; Viviane Ravet; Anisha Dayaram; Daisy Stainton; Simona Kraberger; Peyman Zawar-Reza; Sharyn Goldstien; James V Briskie; Robyn White; Helen Taylor; Christopher Gomez; David G Ainley; Jon S Harding; Rafaela S Fontenele; Joshua Schreck; Simone G Ribeiro; Stephen A Oswald; Jennifer M Arnold; François Enault; Arvind Varsani; Kenneth M Stedman
Journal:  mBio       Date:  2020-09-01       Impact factor: 7.867

  4 in total

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