Literature DB >> 1303743

Time-resolved protein crystallography.

L N Johnson1.   

Abstract

Advances in synchrotron radiation technology have allowed exposure times from protein crystals of the order of milliseconds to be used routinely, and in exceptional circumstances exposure times of 100 ps have been obtained. However, many data sets take seconds to record because of the slow time scale of film change or crystal reorientation or translation when more than one exposure is required. This problem has been addressed by Amemiya et al. (1989). There has been considerable progress in methods to initiate reactions in protein crystals, especially the development of photolabile caged compounds but also temperature jump, pH jump, and diffusion. Although flash lamps deliver pulses of 100 mJ/ms, often several pulses are required to release sufficient product, and reaction initiation can take several seconds. Laser illumination can provide more powerful input, but the laser must be accommodated within the restricted space at the synchrotron station. The requirement to maintain synchrony among the molecules in the crystal lattice as the reaction proceeds and to ensure that the lifetime of intermediates is longer than data collection rates emphasizes the need for chemical characterization of the reaction under study. As Ringe advocated in the studies with chymotrypsin, it may be more profitable to devise conditions under which certain intermediates along the reaction pathway accumulate in the crystal and to record these in a series of discrete steps rather than continuous monitoring of the reaction. The Laue method is limited to those proteins that give well-ordered crystals and problems of transient disorder on initiation of reaction and problems of radiation damage need to be overcome or avoided by suitable experimental protocols.(ABSTRACT TRUNCATED AT 250 WORDS)

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Year:  1992        PMID: 1303743      PMCID: PMC2142107          DOI: 10.1002/pro.5560011002

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  11 in total

1.  Crystalline ribonuclease A loses function below the dynamical transition at 220 K.

Authors:  B F Rasmussen; A M Stock; D Ringe; G A Petsko
Journal:  Nature       Date:  1992-06-04       Impact factor: 49.962

2.  Observation of the light-triggered binding of pyrone to chymotrypsin by Laue x-ray crystallography.

Authors:  B L Stoddard; P Koenigs; N Porter; K Petratos; G A Petsko; D Ringe
Journal:  Proc Natl Acad Sci U S A       Date:  1991-07-01       Impact factor: 11.205

3.  Crystals of haemoglobin with the T quaternary structure bind oxygen noncooperatively with no Bohr effect.

Authors:  A Mozzarelli; C Rivetti; G L Rossi; E R Henry; W A Eaton
Journal:  Nature       Date:  1991-05-30       Impact factor: 49.962

Review 4.  Time-resolved macromolecular crystallography.

Authors:  K Moffat
Journal:  Annu Rev Biophys Biophys Chem       Date:  1989

5.  Photolysis and deacylation of inhibited chymotrypsin.

Authors:  B L Stoddard; J Bruhnke; P Koenigs; N Porter; D Ringe; G A Petsko
Journal:  Biochemistry       Date:  1990-09-04       Impact factor: 3.162

Review 6.  Progress with Laue diffraction studies on protein and virus crystals.

Authors:  J Hajdu; L N Johnson
Journal:  Biochemistry       Date:  1990-02-20       Impact factor: 3.162

7.  Time-resolved X-ray crystallographic study of the conformational change in Ha-Ras p21 protein on GTP hydrolysis.

Authors:  I Schlichting; S C Almo; G Rapp; K Wilson; K Petratos; A Lentfer; A Wittinghofer; W Kabsch; E F Pai; G A Petsko
Journal:  Nature       Date:  1990-05-24       Impact factor: 49.962

8.  Structure of an acyl-enzyme intermediate during catalysis: (guanidinobenzoyl)trypsin.

Authors:  W F Mangel; P T Singer; D M Cyr; T C Umland; D L Toledo; R M Stroud; J W Pflugrath; R M Sweet
Journal:  Biochemistry       Date:  1990-09-11       Impact factor: 3.162

9.  Towards time-resolved diffraction studies with glycogen phosphorylase.

Authors:  E M Duke; A Hadfield; J L Martin; I J Clifton; J Hajdu; L N Johnson; G P Reid; D R Trentham; I Bruce; G W Fleet
Journal:  Ciba Found Symp       Date:  1991

10.  Photoactive yellow protein from the purple phototrophic bacterium, Ectothiorhodospira halophila. Quantum yield of photobleaching and effects of temperature, alcohols, glycerol, and sucrose on kinetics of photobleaching and recovery.

Authors:  T E Meyer; G Tollin; J H Hazzard; M A Cusanovich
Journal:  Biophys J       Date:  1989-09       Impact factor: 4.033

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  3 in total

1.  Dynamic Structural Biology Experiments at XFEL or Synchrotron Sources.

Authors:  Pierre Aller; Allen M Orville
Journal:  Methods Mol Biol       Date:  2021

2.  Protein tracking and detection of protein motion using atomic force microscopy.

Authors:  N H Thomson; M Fritz; M Radmacher; J P Cleveland; C F Schmidt; P K Hansma
Journal:  Biophys J       Date:  1996-05       Impact factor: 4.033

Review 3.  Fleeting opportunities.

Authors:  D Ringe
Journal:  Proc Natl Acad Sci U S A       Date:  1993-03-15       Impact factor: 11.205

  3 in total

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