Literature DB >> 3107984

Catalysis in the crystal: synchrotron radiation studies with glycogen phosphorylase b.

J Hajdu, K R Acharya, D I Stuart, P J McLaughlin, D Barford, N G Oikonomakos, H Klein, L N Johnson.   

Abstract

Direct observation of the progress of a catalysed reaction in crystals of glycogen phosphorylase b has been made possible through fast crystallographic data collection achieved at the Synchrotron Radiation source at Daresbury, UK. In the best experiments, data to 2.7 A resolution (some 108,300 measurements; 21,200 unique reflections) were measured in 25 min. In a series of time-resolved studies in which the control properties of the enzyme were exploited in order to slow down the reaction, the conversion of heptenitol to heptulose-2-phosphate, the phosphorylysis of maltoheptaose to yield glucose-1-phosphate and the oligosaccharide synthesis reaction involving maltotriose and glucose-1-phosphate have been monitored in the crystal. Changes in electron density in the difference Fourier maps are observed as the reaction proceeds not only at the catalytic site but also the allosteric and glycogen storage sites. Phosphorylase b is present in the crystals in the T state and under these conditions exhibits low affinity for both phosphate and oligosaccharide substrates. There are pronounced conformational changes associated with the formation and binding of the high-affinity dead-end product, heptulose-2-phosphate, which show that movement of an arginine residue, Arg 569, is critical for formation of the substrate-phosphate recognition site. The results are discussed with reference to proposals for the enzymic mechanism of phosphorylase. The feasibility for time-resolved studies on other systems and recent advances in this area utilizing Laue diffraction are also discussed.

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Year:  1987        PMID: 3107984      PMCID: PMC553427          DOI: 10.1002/j.1460-2075.1987.tb04786.x

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  33 in total

1.  Design of a diffractometer and flow cell system for X-ray analysis of crystalline proteins with applications to the crystal chemistry of ribonuclease-S.

Authors:  H W Wyckoff; M Doscher; D Tsernoglou; T Inagami; L N Johnson; K D Hardman; N M Allewell; D M Kelly; F M Richards
Journal:  J Mol Biol       Date:  1967-08-14       Impact factor: 5.469

2.  The crystal structure of phosphorylase beta at 6 A resolution.

Authors:  L N Johnson; N B Madsen; J Mosley; K S Wilson
Journal:  J Mol Biol       Date:  1974-12-25       Impact factor: 5.469

3.  Kinetic mechanism of phosphorylase b. Rates of initial velocities and of isotope exchange at equilibrium.

Authors:  H D Engers; W A Bridger; N B Madsen
Journal:  J Biol Chem       Date:  1969-11-10       Impact factor: 5.157

4.  The effect of anions on the activity of phosphorylase b.

Authors:  H D Engers; N B Madsen
Journal:  Biochem Biophys Res Commun       Date:  1968-10-10       Impact factor: 3.575

5.  Studies on the allosteric activation of glycogen phosphorylase b by Nucleotides. I. Activation of phosphorylase b by inosine monophosphate.

Authors:  W J Black; J H Wang
Journal:  J Biol Chem       Date:  1968-11-25       Impact factor: 5.157

6.  Activity of glycogen phosphorylase in the crystalline state.

Authors:  P J Kasvinsky; N B Madsen
Journal:  J Biol Chem       Date:  1976-11-10       Impact factor: 5.157

7.  Crystallographic studies on the activity of glycogen phosphorylase b.

Authors:  I T Weber; L N Johnson; K S Wilson; D G Yeates; D L Wild; J A Jenkins
Journal:  Nature       Date:  1978-08-03       Impact factor: 49.962

8.  X-ray crystallographic and kinetic studies of oligosaccharide binding to phosphorylase.

Authors:  P J Kasvinsky; N B Madsen; R J Fletterick; J Sygusch
Journal:  J Biol Chem       Date:  1978-02-25       Impact factor: 5.157

9.  The regulation of glycogen phosphorylase alpha by nucleotide derivatives. Kinetic and x-ray crystallographic studies.

Authors:  P J Kasvinsky; N B Madsen; J Sygusch; R J Fletterick
Journal:  J Biol Chem       Date:  1978-05-10       Impact factor: 5.157

10.  Complete amino acid sequence of rabbit muscle glycogen phosphorylase.

Authors:  K Titani; A Koide; J Hermann; L H Ericsson; S Kumar; R D Wade; K A Walsh; H Neurath; E H Fischer
Journal:  Proc Natl Acad Sci U S A       Date:  1977-11       Impact factor: 11.205

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  22 in total

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Authors:  B L Stoddard; P Koenigs; N Porter; K Petratos; G A Petsko; D Ringe
Journal:  Proc Natl Acad Sci U S A       Date:  1991-07-01       Impact factor: 11.205

2.  Kinetic properties of tetrameric glycogen phosphorylase b in solution and in the crystalline state.

Authors:  D D Leonidas; N G Oikonomakos; A C Papageorgiou; T G Sotiroudis
Journal:  Protein Sci       Date:  1992-09       Impact factor: 6.725

Review 3.  Determination of protein structures--a series of fortunate events.

Authors:  Maksymilian Chruszcz; Alexander Wlodawer; Wladek Minor
Journal:  Biophys J       Date:  2008-04-25       Impact factor: 4.033

4.  Activator anion binding site in pyridoxal phosphorylase b: the binding of phosphite, phosphate, and fluorophosphate in the crystal.

Authors:  N G Oikonomakos; S E Zographos; K E Tsitsanou; L N Johnson; K R Acharya
Journal:  Protein Sci       Date:  1996-12       Impact factor: 6.725

5.  Detection of Reaction Intermediates in Mg2+-Dependent DNA Synthesis and RNA Degradation by Time-Resolved X-Ray Crystallography.

Authors:  Nadine L Samara; Yang Gao; Jinjun Wu; Wei Yang
Journal:  Methods Enzymol       Date:  2017-05-03       Impact factor: 1.600

6.  X-ray Laue diffraction from crystals of xylose isomerase.

Authors:  G K Farber; P Machin; S C Almo; G A Petsko; J Hajdu
Journal:  Proc Natl Acad Sci U S A       Date:  1988-01       Impact factor: 11.205

Review 7.  Fleeting opportunities.

Authors:  D Ringe
Journal:  Proc Natl Acad Sci U S A       Date:  1993-03-15       Impact factor: 11.205

8.  Excursions in biophysics by a classical enzymologist.

Authors:  E J Helmreich
Journal:  Protein Sci       Date:  1994-03       Impact factor: 6.725

9.  Watching Proteins Function with Time-resolved X-ray Crystallography.

Authors:  Vukica Šrajer; Marius Schmidt
Journal:  J Phys D Appl Phys       Date:  2017-08-22       Impact factor: 3.207

10.  Active site labelling of inositol 1,4,5-trisphosphate 3-kinase A by phenylglyoxal.

Authors:  D Communi; R Lecocq; V Vanweyenberg; C Erneux
Journal:  Biochem J       Date:  1995-08-15       Impact factor: 3.857

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