Literature DB >> 20609409

Synthetic strategies for studying embryonic development.

Xiaohu Ouyang1, James K Chen.   

Abstract

Developmental biology has evolved from a descriptive science to one based on genetic principles and molecular mechanisms. Although molecular biology and genetic technologies have been the primary drivers of this transformation, synthetic strategies have been increasingly utilized to interrogate the mechanisms of embryonic patterning with spatial and temporal precision. In this review, we survey how chemical tools and engineered proteins have been used to perturb developmental processes at the DNA, RNA, protein, and cellular levels. We discuss the design principles, experimental capabilities, and limitations of each method, as well as future challenges for the chemical and developmental biology communities.

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Year:  2010        PMID: 20609409      PMCID: PMC2902240          DOI: 10.1016/j.chembiol.2010.04.013

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  125 in total

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Authors:  Nicolas Fossat; Gilles Chatelain; Gilbert Brun; Thomas Lamonerie
Journal:  EMBO Rep       Date:  2006-07-14       Impact factor: 8.807

2.  Post-translational enzyme activation in an animal via optimized conditional protein splicing.

Authors:  Edmund C Schwartz; Lino Saez; Michael W Young; Tom W Muir
Journal:  Nat Chem Biol       Date:  2006-11-26       Impact factor: 15.040

Review 3.  Electrical activity in early neuronal development.

Authors:  Nicholas C Spitzer
Journal:  Nature       Date:  2006-12-07       Impact factor: 49.962

4.  Small-molecule regulation of zebrafish gene expression.

Authors:  Hanife Esengil; Vicky Chang; John K Mich; James K Chen
Journal:  Nat Chem Biol       Date:  2007-01-21       Impact factor: 15.040

5.  Light-induced activation of distinct modulatory neurons triggers appetitive or aversive learning in Drosophila larvae.

Authors:  Christian Schroll; Thomas Riemensperger; Daniel Bucher; Julia Ehmer; Thomas Völler; Karen Erbguth; Bertram Gerber; Thomas Hendel; Georg Nagel; Erich Buchner; André Fiala
Journal:  Curr Biol       Date:  2006-09-05       Impact factor: 10.834

Review 6.  Next-generation optical technologies for illuminating genetically targeted brain circuits.

Authors:  Karl Deisseroth; Guoping Feng; Ania K Majewska; Gero Miesenböck; Alice Ting; Mark J Schnitzer
Journal:  J Neurosci       Date:  2006-10-11       Impact factor: 6.167

7.  Zebrafish miR-214 modulates Hedgehog signaling to specify muscle cell fate.

Authors:  Alex S Flynt; Nan Li; Elizabeth J Thatcher; Lilianna Solnica-Krezel; James G Patton
Journal:  Nat Genet       Date:  2007-01-14       Impact factor: 38.330

8.  Control of transcription factor activity and osteoblast differentiation in mammalian cells using an evolved small-molecule-dependent intein.

Authors:  Courtney M Yuen; Stephen J Rodda; Steven A Vokes; Andrew P McMahon; David R Liu
Journal:  J Am Chem Soc       Date:  2006-07-12       Impact factor: 15.419

9.  A rapid, reversible, and tunable method to regulate protein function in living cells using synthetic small molecules.

Authors:  Laura A Banaszynski; Ling-Chun Chen; Lystranne A Maynard-Smith; A G Lisa Ooi; Thomas J Wandless
Journal:  Cell       Date:  2006-09-08       Impact factor: 41.582

10.  Identification of inhibitors of ribozyme self-cleavage in mammalian cells via high-throughput screening of chemical libraries.

Authors:  Laising Yen; Maxime Magnier; Ralph Weissleder; Brent R Stockwell; Richard C Mulligan
Journal:  RNA       Date:  2006-03-23       Impact factor: 4.942

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  8 in total

Review 1.  Optochemical Control of Biological Processes in Cells and Animals.

Authors:  Nicholas Ankenbruck; Taylor Courtney; Yuta Naro; Alexander Deiters
Journal:  Angew Chem Int Ed Engl       Date:  2018-02-01       Impact factor: 15.336

2.  Spatiotemporal control of embryonic gene expression using caged morpholinos.

Authors:  Ilya A Shestopalov; James K Chen
Journal:  Methods Cell Biol       Date:  2011       Impact factor: 1.441

3.  Photochemical modulation of Ras-mediated signal transduction using caged farnesyltransferase inhibitors: activation by one- and two-photon excitation.

Authors:  Daniel Abate-Pella; Nicholette A Zeliadt; Joshua D Ochocki; Janel K Warmka; Timothy M Dore; David A Blank; Elizabeth V Wattenberg; Mark D Distefano
Journal:  Chembiochem       Date:  2012-04-11       Impact factor: 3.164

4.  Spatiotemporal resolution of the Ntla transcriptome in axial mesoderm development.

Authors:  Ilya A Shestopalov; Cameron L W Pitt; James K Chen
Journal:  Nat Chem Biol       Date:  2012-01-29       Impact factor: 15.040

5.  Exclusive photorelease of signalling lipids at the plasma membrane.

Authors:  André Nadler; Dmytro A Yushchenko; Rainer Müller; Frank Stein; Suihan Feng; Christophe Mulle; Mario Carta; Carsten Schultz
Journal:  Nat Commun       Date:  2015-12-21       Impact factor: 14.919

Review 6.  Novel synthetic biology approaches for developmental systems.

Authors:  Christine Ho; Leonardo Morsut
Journal:  Stem Cell Reports       Date:  2021-05-11       Impact factor: 7.765

Review 7.  Synthetic living machines: A new window on life.

Authors:  Mo R Ebrahimkhani; Michael Levin
Journal:  iScience       Date:  2021-05-04

Review 8.  Genetic and genomic toolbox of the chordate Ciona intestinalis.

Authors:  Alberto Stolfi; Lionel Christiaen
Journal:  Genetics       Date:  2012-09       Impact factor: 4.562

  8 in total

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