Literature DB >> 17220889

Zebrafish miR-214 modulates Hedgehog signaling to specify muscle cell fate.

Alex S Flynt1, Nan Li, Elizabeth J Thatcher, Lilianna Solnica-Krezel, James G Patton.   

Abstract

Numerous microRNAs (miRNAs) have been discovered in the genomes of higher eukaryotes, and functional studies indicate that they are important during development. However, little is known concerning the function of individual miRNAs. We approached this problem in zebrafish by combining identification of miRNA expression, functional analyses and experimental validation of potential targets. We show that miR-214 is expressed during early segmentation stages in somites and that varying its expression alters the expression of genes regulated by Hedgehog signaling. Inhibition of miR-214 results in a reduction or loss of slow-muscle cell types. We show that su(fu) mRNA, encoding a negative regulator of Hedgehog signaling, is targeted by miR-214. Through regulation of su(fu), miR-214 enables precise specification of muscle cell types by sharpening cellular responses to Hedgehog.

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Year:  2007        PMID: 17220889      PMCID: PMC3982799          DOI: 10.1038/ng1953

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  22 in total

1.  Control of muscle cell-type specification in the zebrafish embryo by Hedgehog signalling.

Authors:  K E Lewis; P D Currie; S Roy; H Schauerte; P Haffter; P W Ingham
Journal:  Dev Biol       Date:  1999-12-15       Impact factor: 3.582

2.  MicroRNAs regulate brain morphogenesis in zebrafish.

Authors:  Antonio J Giraldez; Ryan M Cinalli; Margaret E Glasner; Anton J Enright; J Michael Thomson; Scott Baskerville; Scott M Hammond; David P Bartel; Alexander F Schier
Journal:  Science       Date:  2005-03-17       Impact factor: 47.728

3.  MicroRNA expression in zebrafish embryonic development.

Authors:  Erno Wienholds; Wigard P Kloosterman; Eric Miska; Ezequiel Alvarez-Saavedra; Eugene Berezikov; Ewart de Bruijn; H Robert Horvitz; Sakari Kauppinen; Ronald H A Plasterk
Journal:  Science       Date:  2005-05-26       Impact factor: 47.728

Review 4.  Hedgehog signalling and the specification of muscle cell identity in the zebrafish embryo.

Authors:  Phillip W Ingham; H Rosemary Kim
Journal:  Exp Cell Res       Date:  2005-04-21       Impact factor: 3.905

5.  Hedgehog acts directly on the zebrafish dermomyotome to promote myogenic differentiation.

Authors:  Xuesong Feng; Eric G Adiarte; Stephen H Devoto
Journal:  Dev Biol       Date:  2006-08-30       Impact factor: 3.582

6.  The developmental miRNA profiles of zebrafish as determined by small RNA cloning.

Authors:  Po Yu Chen; Heiko Manninga; Krasimir Slanchev; Minchen Chien; James J Russo; Jingyue Ju; Robert Sheridan; Bino John; Debora S Marks; Dimos Gaidatzis; Chris Sander; Mihaela Zavolan; Thomas Tuschl
Journal:  Genes Dev       Date:  2005-06-01       Impact factor: 11.361

7.  Hedgehog and retinoid signalling confines nkx2.2b expression to the lateral floor plate of the zebrafish trunk.

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Journal:  Mech Dev       Date:  2005-01       Impact factor: 1.882

8.  Negative regulation of Gli1 and Gli2 activator function by Suppressor of fused through multiple mechanisms.

Authors:  Paul C Barnfield; Xiaoyun Zhang; Vijitha Thanabalasingham; Minoru Yoshida; Chi-chung Hui
Journal:  Differentiation       Date:  2005-10       Impact factor: 3.880

9.  Effective targeted gene 'knockdown' in zebrafish.

Authors:  A Nasevicius; S C Ekker
Journal:  Nat Genet       Date:  2000-10       Impact factor: 38.330

10.  The zebrafish mutants dre, uki, and lep encode negative regulators of the hedgehog signaling pathway.

Authors:  Marco J Koudijs; Marjo J den Broeder; Astrid Keijser; Erno Wienholds; Saskia Houwing; Ellen M H C van Rooijen; Robert Geisler; Fredericus J M van Eeden
Journal:  PLoS Genet       Date:  2005-08-19       Impact factor: 5.917

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  151 in total

Review 1.  Small RNAs have a big impact on regeneration.

Authors:  Elizabeth J Thatcher; James G Patton
Journal:  RNA Biol       Date:  2010-05-14       Impact factor: 4.652

2.  Gene knockdown by morpholino-modified oligonucleotides in the zebrafish (Danio rerio) model: applications for developmental toxicology.

Authors:  Alicia R Timme-Laragy; Sibel I Karchner; Mark E Hahn
Journal:  Methods Mol Biol       Date:  2012

3.  miRNAs in human cancer.

Authors:  Xiaomin Zhong; George Coukos; Lin Zhang
Journal:  Methods Mol Biol       Date:  2012

4.  MicroRNA-214 promotes myogenic differentiation by facilitating exit from mitosis via down-regulation of proto-oncogene N-ras.

Authors:  Jun Liu; Xiao-Ju Luo; An-Wen Xiong; Zeng-di Zhang; Shen Yue; Ming-Sheng Zhu; Steven Y Cheng
Journal:  J Biol Chem       Date:  2010-06-09       Impact factor: 5.157

5.  p53 and microRNA-34 are suppressors of canonical Wnt signaling.

Authors:  Nam Hee Kim; Hyun Sil Kim; Nam-Gyun Kim; Inhan Lee; Hyung-Seok Choi; Xiao-Yan Li; Shi Eun Kang; So Young Cha; Joo Kyung Ryu; Jung Min Na; Changbum Park; Kunhong Kim; Sanghyuk Lee; Barry M Gumbiner; Jong In Yook; Stephen J Weiss
Journal:  Sci Signal       Date:  2011-11-01       Impact factor: 8.192

6.  Transcriptome-wide analysis of small RNA expression in early zebrafish development.

Authors:  Chunyao Wei; Leonidas Salichos; Carli M Wittgrove; Antonis Rokas; James G Patton
Journal:  RNA       Date:  2012-03-08       Impact factor: 4.942

Review 7.  Reverse genetics in eukaryotes.

Authors:  Serge Hardy; Vincent Legagneux; Yann Audic; Luc Paillard
Journal:  Biol Cell       Date:  2010-10       Impact factor: 4.458

Review 8.  Insights on chiral, backbone modified peptide nucleic acids: Properties and biological activity.

Authors:  Maria Moccia; Mauro F A Adamo; Michele Saviano
Journal:  Artif DNA PNA XNA       Date:  2016-01-11

9.  Functional screening identifies miR-315 as a potent activator of Wingless signaling.

Authors:  Serena J Silver; Joshua W Hagen; Katsutomo Okamura; Norbert Perrimon; Eric C Lai
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-07       Impact factor: 11.205

10.  The miR-30 miRNA family regulates Xenopus pronephros development and targets the transcription factor Xlim1/Lhx1.

Authors:  Raman Agrawal; Uyen Tran; Oliver Wessely
Journal:  Development       Date:  2009-12       Impact factor: 6.868

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