Literature DB >> 20601974

Multicolor single-molecule FRET to explore protein folding and binding.

Yann Gambin1, Ashok A Deniz.   

Abstract

Proper protein function in cells, tissues and organisms depends critically on correct protein folding or interaction with partners. Over the last decade, single-molecule FRET (smFRET) has emerged as a powerful tool to probe complex distributions, dynamics, pathways and landscapes in protein folding and binding reactions, leveraging its ability to avoid averaging over an ensemble of molecules. While smFRET was practiced in a two-color form until recently, the last few years have seen the development of enhanced multicolor smFRET methods that provide additional structural information permitting us to probe more complex mechanisms. In this review, we provide a brief introduction to the smFRET technique, then follow with advanced multicolor measurements and end with ongoing methodology developments in microfluidics and protein labeling that are beginning to make these techniques more broadly applicable to answering a number of key questions about folding and binding.

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Year:  2010        PMID: 20601974      PMCID: PMC3005188          DOI: 10.1039/c003024d

Source DB:  PubMed          Journal:  Mol Biosyst        ISSN: 1742-2051


  94 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  1999-05-25       Impact factor: 11.205

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Journal:  Nature       Date:  2003-12-18       Impact factor: 49.962

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Authors:  Olga K Dudko; Gerhard Hummer; Attila Szabo
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-13       Impact factor: 11.205

6.  Single-molecule FRET reveals structural heterogeneity of SDS-bound alpha-synuclein.

Authors:  Gertjan Veldhuis; Ine Segers-Nolten; Eva Ferlemann; Vinod Subramaniam
Journal:  Chembiochem       Date:  2009-02-13       Impact factor: 3.164

Review 7.  Exploring RNA folding one molecule at a time.

Authors:  Elvin A Alemán; Rajan Lamichhane; David Rueda
Journal:  Curr Opin Chem Biol       Date:  2008-10-07       Impact factor: 8.822

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Journal:  Annu Rev Biophys       Date:  2008       Impact factor: 12.981

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Journal:  Protein Sci       Date:  1994-11       Impact factor: 6.725

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  23 in total

1.  Application of fluorescence resonance energy transfer in protein studies.

Authors:  Linlin Ma; Fan Yang; Jie Zheng
Journal:  J Mol Struct       Date:  2014-11-05       Impact factor: 3.196

2.  The statistics of protein expression ratios for cellular fluorescence studies.

Authors:  Elizabeth M Smith; Joachim D Mueller
Journal:  Eur Biophys J       Date:  2012-02-04       Impact factor: 1.733

3.  A Bayesian Nonparametric Approach to Single Molecule Förster Resonance Energy Transfer.

Authors:  Ioannis Sgouralis; Shreya Madaan; Franky Djutanta; Rachael Kha; Rizal F Hariadi; Steve Pressé
Journal:  J Phys Chem B       Date:  2019-01-10       Impact factor: 2.991

Review 4.  The bright future of single-molecule fluorescence imaging.

Authors:  Manuel F Juette; Daniel S Terry; Michael R Wasserman; Zhou Zhou; Roger B Altman; Qinsi Zheng; Scott C Blanchard
Journal:  Curr Opin Chem Biol       Date:  2014-06-21       Impact factor: 8.822

5.  Quantitative interpretation of FRET experiments via molecular simulation: force field and validation.

Authors:  Robert B Best; Hagen Hofmann; Daniel Nettels; Benjamin Schuler
Journal:  Biophys J       Date:  2015-06-02       Impact factor: 4.033

6.  Three-Color Single-Molecule FRET and Fluorescence Lifetime Analysis of Fast Protein Folding.

Authors:  Janghyun Yoo; John M Louis; Irina V Gopich; Hoi Sung Chung
Journal:  J Phys Chem B       Date:  2018-10-10       Impact factor: 2.991

Review 7.  A cell-free approach to accelerate the study of protein-protein interactions in vitro.

Authors:  E Sierecki; N Giles; M Polinkovsky; M Moustaqil; K Alexandrov; Y Gambin
Journal:  Interface Focus       Date:  2013-10-06       Impact factor: 3.906

Review 8.  Shedding light on protein folding landscapes by single-molecule fluorescence.

Authors:  Priya R Banerjee; Ashok A Deniz
Journal:  Chem Soc Rev       Date:  2014-02-21       Impact factor: 54.564

Review 9.  Single-molecule fluorescence studies of intrinsically disordered proteins and liquid phase separation.

Authors:  Irem Nasir; Paulo L Onuchic; Sergio R Labra; Ashok A Deniz
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2019-05-02       Impact factor: 3.036

Review 10.  Regulated unfolding of proteins in signaling.

Authors:  Diana M Mitrea; Richard W Kriwacki
Journal:  FEBS Lett       Date:  2013-02-20       Impact factor: 4.124

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