Literature DB >> 11329252

Reaction-induced infrared difference spectroscopy for the study of protein reaction mechanisms.

C Zscherp1, A Barth.   

Abstract

This paper reviews state-of-the-art reaction-induced infrared difference spectroscopy of proteins. This technique enables detailed characterization of enzyme function on the level of single bonds of proteins, cofactors, or substrates. The following methods to initiate a reaction in the infrared sample are discussed: (i) light-induced difference spectroscopy, (ii) attenuated total reflection with buffer exchange, (iii) the infrared variant of stopped and continuous flow, (iv) temperature and pressure jump, (v) photolytical release of effector substances from caged compounds, (vi) equilibrium electrochemistry, and (vii) photoreduction. Illustrating applications are given including hot topics from the fields of bioenergetics, protein folding, and molecule--protein interaction.

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Year:  2001        PMID: 11329252     DOI: 10.1021/bi002567y

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  19 in total

1.  Characterization of a new caged proton capable of inducing large pH jumps.

Authors:  Andreas Barth; John E T Corrie
Journal:  Biophys J       Date:  2002-11       Impact factor: 4.033

2.  Conformational changes in gastric H+/K+-ATPase monitored by difference Fourier-transform infrared spectroscopy and hydrogen/deuterium exchange.

Authors:  Frantz Scheirlinckx; Vincent Raussens; Jean-Marie Ruysschaert; Erik Goormaghtigh
Journal:  Biochem J       Date:  2004-08-15       Impact factor: 3.857

3.  Protein Ligation of the Photosynthetic Oxygen-Evolving Center.

Authors:  Richard J Debus
Journal:  Coord Chem Rev       Date:  2008-02       Impact factor: 22.315

4.  Calculated vibrational properties of pigments in protein binding sites.

Authors:  Hari Prasad Lamichhane; Gary Hastings
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-13       Impact factor: 11.205

5.  Phosphoenolpyruvate and Mg2+ binding to pyruvate kinase monitored by infrared spectroscopy.

Authors:  Saroj Kumar; Andreas Barth
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

6.  Evidence from FTIR difference spectroscopy of an extensive network of hydrogen bonds near the oxygen-evolving Mn(4)Ca cluster of photosystem II involving D1-Glu65, D2-Glu312, and D1-Glu329.

Authors:  Rachel J Service; Warwick Hillier; Richard J Debus
Journal:  Biochemistry       Date:  2010-08-10       Impact factor: 3.162

7.  Interactions of phosphate groups of ATP and Aspartyl phosphate with the sarcoplasmic reticulum Ca2+-ATPase: an FTIR study.

Authors:  Man Liu; Maria Krasteva; Andreas Barth
Journal:  Biophys J       Date:  2005-09-16       Impact factor: 4.033

8.  Light-induced Difference Terahertz Spectroscopy.

Authors:  Y C Shen; P C Upadhya; A G Davies; E H Linfield
Journal:  J Biol Phys       Date:  2003-06       Impact factor: 1.365

9.  Phosphate binding in the active site of alkaline phosphatase and the interactions of 2-nitrosoacetophenone with alkaline phosphatase-induced small structural changes.

Authors:  Le Zhang; René Buchet; Gérard Azzar
Journal:  Biophys J       Date:  2004-06       Impact factor: 4.033

10.  ATP dependent rotational motion of group II chaperonin observed by X-ray single molecule tracking.

Authors:  Hiroshi Sekiguchi; Ayumi Nakagawa; Kazuki Moriya; Koki Makabe; Kouhei Ichiyanagi; Shunsuke Nozawa; Tokushi Sato; Shin-ichi Adachi; Kunihiro Kuwajima; Masafumi Yohda; Yuji C Sasaki
Journal:  PLoS One       Date:  2013-05-29       Impact factor: 3.240

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