Literature DB >> 22474345

A hydrogen-bonding network plays a catalytic role in photosynthetic oxygen evolution.

Brandon C Polander1, Bridgette A Barry.   

Abstract

In photosystem II, oxygen evolution occurs by the accumulation of photo-induced oxidizing equivalents at the oxygen-evolving complex (OEC). The sequentially oxidized states are called the S(0)-S(4) states, and the dark stable state is S(1). Hydrogen bonds to water form a network around the OEC; this network is predicted to involve multiple peptide carbonyl groups. In this work, we tested the idea that a network of hydrogen bonded water molecules plays a catalytic role in water oxidation. As probes, we used OEC peptide carbonyl frequencies, the substrate-based inhibitor, ammonia, and the sugar, trehalose. Reaction-induced FT-IR spectroscopy was used to describe the protein dynamics associated with the S(1) to S(2) transition. A shift in an amide CO vibrational frequency (1664 (S(1)) to 1653 (S(2)) cm(-1)) was observed, consistent with an increase in hydrogen bond strength when the OEC is oxidized. Treatment with ammonia/ammonium altered these CO vibrational frequencies. The ammonia-induced spectral changes are attributed to alterations in hydrogen bonding, when ammonia/ammonium is incorporated into the OEC hydrogen bond network. The ammonia-induced changes in CO frequency were reversed or blocked when trehalose was substituted for sucrose. This trehalose effect is attributed to a displacement of ammonia molecules from the hydrogen bond network. These results imply that ammonia, and by extension water, participate in a catalytically essential hydrogen bond network, which involves OEC peptide CO groups. Comparison to the ammonia transporter, AmtB, reveals structural similarities with the bound water network in the OEC.

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Year:  2012        PMID: 22474345      PMCID: PMC3341037          DOI: 10.1073/pnas.1200093109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

1.  Time-resolved vibrational spectroscopy detects protein-based intermediates in the photosynthetic oxygen-evolving cycle.

Authors:  Bridgette A Barry; Ian B Cooper; Antonio De Riso; Scott H Brewer; Dung M Vu; R Brian Dyer
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-21       Impact factor: 11.205

Review 2.  Structure and function of photosystems I and II.

Authors:  Nathan Nelson; Charles F Yocum
Journal:  Annu Rev Plant Biol       Date:  2006       Impact factor: 26.379

3.  Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 Å.

Authors:  Yasufumi Umena; Keisuke Kawakami; Jian-Ren Shen; Nobuo Kamiya
Journal:  Nature       Date:  2011-04-17       Impact factor: 49.962

4.  Perturbations at the chloride site during the photosynthetic oxygen-evolving cycle.

Authors:  Ian B Cooper; Bridgette A Barry
Journal:  Photosynth Res       Date:  2007-03-21       Impact factor: 3.573

5.  The mechanism of ammonia transport based on the crystal structure of AmtB of Escherichia coli.

Authors:  Lei Zheng; Dirk Kostrewa; Simon Bernèche; Fritz K Winkler; Xiao-Dan Li
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-24       Impact factor: 11.205

6.  Cyanobacterial photosystem II at 2.9-A resolution and the role of quinones, lipids, channels and chloride.

Authors:  Albert Guskov; Jan Kern; Azat Gabdulkhakov; Matthias Broser; Athina Zouni; Wolfram Saenger
Journal:  Nat Struct Mol Biol       Date:  2009-02-15       Impact factor: 15.369

7.  Amino acid residues that influence the binding of manganese or calcium to photosystem II. 1. The lumenal interhelical domains of the D1 polypeptide.

Authors:  H A Chu; A P Nguyen; R J Debus
Journal:  Biochemistry       Date:  1995-05-02       Impact factor: 3.162

8.  Amino acid residues that influence the binding of manganese or calcium to photosystem II. 2. The carboxy-terminal domain of the D1 polypeptide.

Authors:  H A Chu; A P Nguyen; R J Debus
Journal:  Biochemistry       Date:  1995-05-02       Impact factor: 3.162

9.  A difference Fourier transform infrared spectroscopic study of chlorophyll oxidation in hydroxylamine-treated photosystem II.

Authors:  G M MacDonald; J J Steenhuis; B A Barry
Journal:  J Biol Chem       Date:  1995-04-14       Impact factor: 5.157

10.  Calcium ligation in photosystem II under inhibiting conditions.

Authors:  Bridgette A Barry; Charles Hicks; Antonio De Riso; David L Jenson
Journal:  Biophys J       Date:  2005-07       Impact factor: 4.033

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  13 in total

1.  An intrinsically disordered photosystem II subunit, PsbO, provides a structural template and a sensor of the hydrogen-bonding network in photosynthetic water oxidation.

Authors:  Adam R Offenbacher; Brandon C Polander; Bridgette A Barry
Journal:  J Biol Chem       Date:  2013-08-12       Impact factor: 5.157

2.  Rapid Sampling of Hydrogen Bond Networks for Computational Protein Design.

Authors:  Jack B Maguire; Scott E Boyken; David Baker; Brian Kuhlman
Journal:  J Chem Theory Comput       Date:  2018-04-20       Impact factor: 6.006

3.  Assembly and properties of heterobimetallic Co(II/III)/Ca(II) complexes with aquo and hydroxo ligands.

Authors:  David C Lacy; Young Jun Park; Joseph W Ziller; Junko Yano; A S Borovik
Journal:  J Am Chem Soc       Date:  2012-10-15       Impact factor: 15.419

4.  Thermodynamics of Proton and Electron Transfer in Tetranuclear Clusters with Mn-OH2/OH Motifs Relevant to H2O Activation by the Oxygen Evolving Complex in Photosystem II.

Authors:  Christopher J Reed; Theodor Agapie
Journal:  J Am Chem Soc       Date:  2018-08-16       Impact factor: 15.419

5.  Water is an active matrix of life for cell and molecular biology.

Authors:  Philip Ball
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-07       Impact factor: 11.205

6.  Rescue of deleterious mutations by the compensatory Y30F mutation in ketosteroid isomerase.

Authors:  Hyung Jin Cha; Do Soo Jang; Yeon-Gil Kim; Bee Hak Hong; Jae-Sung Woo; Kyong-Tai Kim; Kwan Yong Choi
Journal:  Mol Cells       Date:  2013-06-03       Impact factor: 5.034

7.  Calcium, conformational selection, and redox-active tyrosine YZ in the photosynthetic oxygen-evolving cluster.

Authors:  Zhanjun Guo; Jiayuan He; Bridgette A Barry
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-11       Impact factor: 11.205

8.  Hydroxyectoine protects Mn-depleted photosystem II against photoinhibition acting as a source of electrons.

Authors:  D V Yanykin; M Malferrari; S Rapino; G Venturoli; A Yu Semenov; M D Mamedov
Journal:  Photosynth Res       Date:  2019-01-30       Impact factor: 3.573

9.  Detection of an intermediary, protonated water cluster in photosynthetic oxygen evolution.

Authors:  Brandon C Polander; Bridgette A Barry
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-11       Impact factor: 11.205

Review 10.  Proton transport facilitating water-oxidation: the role of second sphere ligands surrounding the catalytic metal cluster.

Authors:  Han Bao; Preston L Dilbeck; Robert L Burnap
Journal:  Photosynth Res       Date:  2013-08-24       Impact factor: 3.573

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