Literature DB >> 20590094

Probing slow protein dynamics by adiabatic R(1rho) and R(2rho) NMR experiments.

Silvia Mangia1, Nathaniel J Traaseth, Gianluigi Veglia, Michael Garwood, Shalom Michaeli.   

Abstract

Slow micros/ms dynamics involved in protein folding, binding, catalysis, and allostery are currently detected using NMR dispersion experiments such as CPMG (Carr-Purcell-Meiboom-Gill) or spin-lock R(1rho). In these methods, protein dynamics are obtained by analyzing relaxation dispersion curves obtained from either changing the time spacing between 180 degree pulses or by changing the effective spin-locking field strength. In this Communication, we introduce a new method to induce a dispersion of relaxation rates. Our approach relies on altering the shape of the adiabatic full passage pulse and is conceptually different from existing approaches. By changing the nature of the adiabatic radiofrequency irradiation, we are able to obtain rotating frame R(1rho) and R(2rho) dispersion curves that are sensitive to slow micros/ms protein dynamics (demonstrated with ubiquitin). The strengths of this method are to (a) extend the dynamic range of the relaxation dispersion analysis, (b) avoid the need for multiple magnetic field strengths to extract dynamic parameters, (c) measure accurate relaxation rates that are independent of frequency offset, and (d) reduce the stress to NMR hardware (e.g., cryoprobes).

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Year:  2010        PMID: 20590094      PMCID: PMC2929914          DOI: 10.1021/ja1038787

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  28 in total

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Review 5.  The role of dynamics in allosteric regulation.

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  19 in total

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Authors:  Arthur G Palmer
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3.  Multiple frequency saturation pulses reduce CEST acquisition time for quantifying conformational exchange in biomolecules.

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Journal:  Magn Reson Med       Date:  2011-06-30       Impact factor: 4.668

5.  Mathematical treatment of adiabatic fast passage pulses for the computation of nuclear spin relaxation rates in proteins with conformational exchange.

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6.  Probing the Broad Time Scale and Heterogeneous Conformational Dynamics in the Catalytic Core of the Arf-GAP ASAP1 via Methyl Adiabatic Relaxation Dispersion.

Authors:  Fa-An Chao; Yifei Li; Yue Zhang; R Andrew Byrd
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7.  Evaluating the influence of initial magnetization conditions on extracted exchange parameters in NMR relaxation experiments: applications to CPMG and CEST.

Authors:  Tairan Yuwen; Ashok Sekhar; Lewis E Kay
Journal:  J Biomol NMR       Date:  2016-07-29       Impact factor: 2.835

Review 8.  Relaxing with liquids and solids - A perspective on biomolecular dynamics.

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Journal:  J Magn Reson       Date:  2019-07-11       Impact factor: 2.229

9.  Frequency offset dependence of adiabatic rotating frame relaxation rate constants: relevance to MRS investigations of metabolite dynamics in vivo.

Authors:  Silvia Mangia; Timo Liimatainen; Michael Garwood; Ivan Tkac; Pierre-Gilles Henry; Dinesh Deelchand; Shalom Michaeli
Journal:  NMR Biomed       Date:  2011-01-25       Impact factor: 4.044

10.  Application of geometric approximation to the CPMG experiment: Two- and three-site exchange.

Authors:  Fa-An Chao; R Andrew Byrd
Journal:  J Magn Reson       Date:  2017-02-04       Impact factor: 2.229

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