Literature DB >> 14675554

The role of dynamics in allosteric regulation.

Dorothee Kern1, Erik R P Zuiderweg.   

Abstract

The biomolecular conformational changes often associated with allostery are, by definition, dynamic processes. Recent publications have disclosed the role of pre-existing equilibria of conformational substates in this process. In addition, the role of dynamics as an entropic carrier of free energy of allostery has been investigated. Recent work thus shows that dynamics is pivotal to allostery, and that it constitutes much more than just the move from the 'T'-state to the 'R'-state. Emerging computational studies have described the actual pathways of allosteric change.

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Year:  2003        PMID: 14675554     DOI: 10.1016/j.sbi.2003.10.008

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  249 in total

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Journal:  Biophys Chem       Date:  2011-04-05       Impact factor: 2.352

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Authors:  Maria Victoria E Botuyan; Yves Nominé; Xiaochun Yu; Nenad Juranic; Slobodan Macura; Junjie Chen; Georges Mer
Journal:  Structure       Date:  2004-07       Impact factor: 5.006

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Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-08       Impact factor: 11.205

4.  Siderocalin Q83 exhibits differential slow dynamics upon ligand binding.

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Journal:  J Biomol NMR       Date:  2011-09-27       Impact factor: 2.835

5.  Heteronuclear Adiabatic Relaxation Dispersion (HARD) for quantitative analysis of conformational dynamics in proteins.

Authors:  Nathaniel J Traaseth; Fa-An Chao; Larry R Masterson; Silvia Mangia; Michael Garwood; Shalom Michaeli; Burckhard Seelig; Gianluigi Veglia
Journal:  J Magn Reson       Date:  2012-04-06       Impact factor: 2.229

6.  Predicting interaction sites from the energetics of isolated proteins: a new approach to epitope mapping.

Authors:  Guido Scarabelli; Giulia Morra; Giorgio Colombo
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

7.  Substrate-modulated thermal fluctuations affect long-range allosteric signaling in protein homodimers: exemplified in CAP.

Authors:  Hedvika Toncrova; Tom C B McLeish
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

8.  Entropic mechanism of large fluctuation in allosteric transition.

Authors:  Kazuhito Itoh; Masaki Sasai
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-12       Impact factor: 11.205

9.  Nucleation of an allosteric response via ligand-induced loop folding.

Authors:  Saranga Naganathan; Dorothy Beckett
Journal:  J Mol Biol       Date:  2007-07-26       Impact factor: 5.469

10.  Hinge Twists and Population Shifts Deliver Regulated Catalysis for ATP-PRT in Histidine Biosynthesis.

Authors:  Wanting Jiao; Gerd Mittelstädt; Gert-Jan Moggré; Emily J Parker
Journal:  Biophys J       Date:  2019-04-09       Impact factor: 4.033

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