Literature DB >> 20577775

Drift and diffusion of a confined semiflexible chain.

G Nam1, A Johner, N-K Lee.   

Abstract

We study the transverse and longitudinal linear response function of rigid chains subjected to an external force. Our main concern are stiff polymers confined in narrow pores with diameter less than their persistence length. We explicitly consider confinement in a transverse harmonic potential and generalize results by scaling arguments. Our results describe the drift of the filament under an external force, time evolution of the filament shape, and filament diffusion. Diffusion of a confined filament resembles the celebrated reptation process for flexible chains, albeit with distinct kinetic exponents. The limiting case of stiff free filaments is also mentioned.

Entities:  

Year:  2010        PMID: 20577775     DOI: 10.1140/epje/i2010-10624-1

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  11 in total

1.  Straightening of Thermal Fluctuations in Semiflexible Polymers by Applied Tension.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-12-30       Impact factor: 9.161

2.  A bending mode analysis for growing microtubules: evidence for a velocity-dependent rigidity.

Authors:  Marcel E Janson; Marileen Dogterom
Journal:  Biophys J       Date:  2004-10       Impact factor: 4.033

3.  Dynamic scattering of semirigid macromolecules.

Authors:  I A Nyrkova; A N Semenov
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-07-09

4.  Coupling of transverse and longitudinal response in stiff polymers.

Authors:  Benedikt Obermayer; Oskar Hallatschek
Journal:  Phys Rev Lett       Date:  2007-08-31       Impact factor: 9.161

5.  Kinetics of a semiflexible chain under external force.

Authors:  Gi-moon Nam; Nam-Kyung Lee
Journal:  J Chem Phys       Date:  2007-04-28       Impact factor: 3.488

6.  Bending dynamics of fluctuating biopolymers probed by automated high-resolution filament tracking.

Authors:  Clifford P Brangwynne; Gijsje H Koenderink; Ed Barry; Zvonimir Dogic; Frederick C MacKintosh; David A Weitz
Journal:  Biophys J       Date:  2007-04-06       Impact factor: 4.033

7.  Microtubule dynamics depart from the wormlike chain model.

Authors:  Katja M Taute; Francesco Pampaloni; Erwin Frey; Ernst-Ludwig Florin
Journal:  Phys Rev Lett       Date:  2008-01-15       Impact factor: 9.161

8.  Conformation and dynamics of DNA confined in slitlike nanofluidic channels.

Authors:  Douwe Jan Bonthuis; Christine Meyer; Derek Stein; Cees Dekker
Journal:  Phys Rev Lett       Date:  2008-09-05       Impact factor: 9.161

9.  Scaling theory of DNA confined in nanochannels and nanoslits.

Authors:  Theo Odijk
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2008-06-09

10.  Propagation and relaxation of tension in stiff polymers.

Authors:  Oskar Hallatschek; Erwin Frey; Klaus Kroy
Journal:  Phys Rev Lett       Date:  2005-02-25       Impact factor: 9.161

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