Literature DB >> 17416612

Bending dynamics of fluctuating biopolymers probed by automated high-resolution filament tracking.

Clifford P Brangwynne1, Gijsje H Koenderink, Ed Barry, Zvonimir Dogic, Frederick C MacKintosh, David A Weitz.   

Abstract

Microscope images of fluctuating biopolymers contain a wealth of information about their underlying mechanics and dynamics. However, successful extraction of this information requires precise localization of filament position and shape from thousands of noisy images. Here, we present careful measurements of the bending dynamics of filamentous (F-)actin and microtubules at thermal equilibrium with high spatial and temporal resolution using a new, simple but robust, automated image analysis algorithm with subpixel accuracy. We find that slender actin filaments have a persistence length of approximately 17 microm, and display a q(-4)-dependent relaxation spectrum, as expected from viscous drag. Microtubules have a persistence length of several millimeters; interestingly, there is a small correlation between total microtubule length and rigidity, with shorter filaments appearing softer. However, we show that this correlation can arise, in principle, from intrinsic measurement noise that must be carefully considered. The dynamic behavior of the bending of microtubules also appears more complex than that of F-actin, reflecting their higher-order structure. These results emphasize both the power and limitations of light microscopy techniques for studying the mechanics and dynamics of biopolymers.

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Year:  2007        PMID: 17416612      PMCID: PMC1914425          DOI: 10.1529/biophysj.106.096966

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  28 in total

1.  Quantitative comparison of algorithms for tracking single fluorescent particles.

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Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

2.  Effect of internal friction on biofilament dynamics.

Authors:  Michael G Poirier; John F Marko
Journal:  Phys Rev Lett       Date:  2002-05-16       Impact factor: 9.161

3.  Elastic behavior of cross-linked and bundled actin networks.

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Journal:  Science       Date:  2004-05-28       Impact factor: 47.728

4.  Elasticity of semiflexible biopolymer networks.

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Journal:  Phys Rev Lett       Date:  1995-12-11       Impact factor: 9.161

5.  Internal motility in stiffening actin-myosin networks.

Authors:  Jörg Uhde; Manfred Keller; Erich Sackmann; Andrea Parmeggiani; Erwin Frey
Journal:  Phys Rev Lett       Date:  2004-12-20       Impact factor: 9.161

6.  Design of steerable filters for feature detection using canny-like criteria.

Authors:  Mathews Jacob; Michael Unser
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2004-08       Impact factor: 6.226

7.  Measurement of the persistence length of polymerized actin using fluorescence microscopy.

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Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1993-09

8.  F-actin, a model polymer for semiflexible chains in dilute, semidilute, and liquid crystalline solutions.

Authors:  J Käs; H Strey; J X Tang; D Finger; R Ezzell; E Sackmann; P A Janmey
Journal:  Biophys J       Date:  1996-02       Impact factor: 4.033

9.  Analysis of microtubule rigidity using hydrodynamic flow and thermal fluctuations.

Authors:  P Venier; A C Maggs; M F Carlier; D Pantaloni
Journal:  J Biol Chem       Date:  1994-05-06       Impact factor: 5.157

10.  Flexural rigidity of microtubules measured with the use of optical tweezers.

Authors:  H Felgner; R Frank; M Schliwa
Journal:  J Cell Sci       Date:  1996-02       Impact factor: 5.285

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  39 in total

Review 1.  Physics of bacterial morphogenesis.

Authors:  Sean X Sun; Hongyuan Jiang
Journal:  Microbiol Mol Biol Rev       Date:  2011-12       Impact factor: 11.056

2.  Spectral analysis methods for the robust measurement of the flexural rigidity of biopolymers.

Authors:  David Valdman; Paul J Atzberger; Dezhi Yu; Steve Kuei; Megan T Valentine
Journal:  Biophys J       Date:  2012-03-06       Impact factor: 4.033

3.  Drift and diffusion of a confined semiflexible chain.

Authors:  G Nam; A Johner; N-K Lee
Journal:  Eur Phys J E Soft Matter       Date:  2010-06-24       Impact factor: 1.890

4.  A nonequilibrium power balance relation for analyzing dissipative filament dynamics.

Authors:  Falko Ziebert; Hervé Mohrbach; Igor M Kulić
Journal:  Eur Phys J E Soft Matter       Date:  2015-12-22       Impact factor: 1.890

5.  Force fluctuations and polymerization dynamics of intracellular microtubules.

Authors:  Clifford P Brangwynne; F C MacKintosh; David A Weitz
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-02       Impact factor: 11.205

6.  Cardiac myosin binding protein-C is essential for thick-filament stability and flexural rigidity.

Authors:  Lori R Nyland; Bradley M Palmer; Zengyi Chen; David W Maughan; Christine E Seidman; J G Seidman; Laurent Kreplak; Jim O Vigoreaux
Journal:  Biophys J       Date:  2009-04-22       Impact factor: 4.033

7.  Chapter 19: Mechanical response of cytoskeletal networks.

Authors:  Margaret L Gardel; Karen E Kasza; Clifford P Brangwynne; Jiayu Liu; David A Weitz
Journal:  Methods Cell Biol       Date:  2008       Impact factor: 1.441

Review 8.  Cytoplasmic diffusion: molecular motors mix it up.

Authors:  Clifford P Brangwynne; Gijsje H Koenderink; Frederick C MacKintosh; David A Weitz
Journal:  J Cell Biol       Date:  2008-11-10       Impact factor: 10.539

9.  Microtubules soften due to cross-sectional flattening.

Authors:  Edvin Memet; Feodor Hilitski; Margaret A Morris; Walter J Schwenger; Zvonimir Dogic; L Mahadevan
Journal:  Elife       Date:  2018-06-01       Impact factor: 8.140

Review 10.  Glass-like dynamics in the cell and in cellular collectives.

Authors:  Monirosadat Sadati; Amir Nourhani; Jeffrey J Fredberg; Nader Taheri Qazvini
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2014-01-15
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