Literature DB >> 18643207

Scaling theory of DNA confined in nanochannels and nanoslits.

Theo Odijk1.   

Abstract

A scaling analysis is presented of the statistics of long DNA confined in nanochannels and nanoslits. It is argued that there are several regimes in between the de Gennes and Odijk limits introduced long ago. The DNA chain folds back on itself giving rise to a global persistence length that may be very large owing to entropic deflection. Moreover, there is an orientational excluded-volume effect between the DNA segments imposed solely by the nanoconfinement. These two effects cause the chain statistics to be intricate leading to nontrivial power laws for the chain extension in the intermediate regimes. It is stressed that DNA confinement within nanochannels differs from that in nanoslits because the respective orientational excluded-volume effects are not the same.

Year:  2008        PMID: 18643207     DOI: 10.1103/PhysRevE.77.060901

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  51 in total

1.  Fluctuation modes of nanoconfined DNA.

Authors:  Alena Karpusenko; Joshua H Carpenter; Chunda Zhou; Shuang Fang Lim; Junhan Pan; Robert Riehn
Journal:  J Appl Phys       Date:  2012-01-17       Impact factor: 2.546

2.  Resolution limit for DNA barcodes in the Odijk regime.

Authors:  Yanwei Wang; Wes F Reinhart; Douglas R Tree; Kevin D Dorfman
Journal:  Biomicrofluidics       Date:  2012-01-03       Impact factor: 2.800

3.  Drift and diffusion of a confined semiflexible chain.

Authors:  G Nam; A Johner; N-K Lee
Journal:  Eur Phys J E Soft Matter       Date:  2010-06-24       Impact factor: 1.890

4.  Measurements of DNA barcode label separations in nanochannels from time-series data.

Authors:  Julian Sheats; Jeffrey G Reifenberger; Han Cao; Kevin D Dorfman
Journal:  Biomicrofluidics       Date:  2015-12-29       Impact factor: 2.800

5.  Presentation of large DNA molecules for analysis as nanoconfined dumbbells.

Authors:  Kristy L Kounovsky-Shafer; Juan P Hernández-Ortiz; Kyubong Jo; Theo Odijk; Juan J de Pablo; David C Schwartz
Journal:  Macromolecules       Date:  2013-10-22       Impact factor: 5.985

6.  Electro-entropic excluded volume effects on DNA looping and relaxation in nanochannels.

Authors:  Yeng-Long Chen
Journal:  Biomicrofluidics       Date:  2013-10-22       Impact factor: 2.800

7.  Entropic depletion of DNA in triangular nanochannels.

Authors:  Wesley F Reinhart; Douglas R Tree; Kevin D Dorfman
Journal:  Biomicrofluidics       Date:  2013-03-01       Impact factor: 2.800

8.  Modeling the relaxation time of DNA confined in a nanochannel.

Authors:  Douglas R Tree; Yanwei Wang; Kevin D Dorfman
Journal:  Biomicrofluidics       Date:  2013-10-22       Impact factor: 2.800

9.  Evaluation of the Kirkwood approximation for the diffusivity of channel-confined DNA chains in the de Gennes regime.

Authors:  Aashish Jain; Kevin D Dorfman
Journal:  Biomicrofluidics       Date:  2015-04-07       Impact factor: 2.800

10.  Limitations of the equivalent neutral polymer assumption for theories describing nanochannel-confined DNA.

Authors:  Aditya Bikram Bhandari; Kevin D Dorfman
Journal:  Phys Rev E       Date:  2020-01       Impact factor: 2.529

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