Literature DB >> 18851263

Conformation and dynamics of DNA confined in slitlike nanofluidic channels.

Douwe Jan Bonthuis1, Christine Meyer, Derek Stein, Cees Dekker.   

Abstract

Using laser fluorescence microscopy, we study the shape and dynamics of individual DNA molecules in slitlike nanochannels confined to a fraction of their bulk radius of gyration. With a confinement size spanning 2 orders of magnitude, we observe a transition from the de Gennes regime to the Odijk regime in the scaling of both the radius of gyration and the relaxation time. The radius of gyration and the relaxation time follow the predicted scaling in the de Gennes regime, while, unexpectedly, the relaxation time shows a sharp decrease in the Odijk regime. The radius of gyration remains constant in the Odijk regime. Additionally, we report the first measurements of the effect of confinement on the shape anisotropy.

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Year:  2008        PMID: 18851263     DOI: 10.1103/PhysRevLett.101.108303

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  24 in total

1.  Drift and diffusion of a confined semiflexible chain.

Authors:  G Nam; A Johner; N-K Lee
Journal:  Eur Phys J E Soft Matter       Date:  2010-06-24       Impact factor: 1.890

2.  High throughput fabrication of disposable nanofluidic lab-on-chip devices for single molecule studies.

Authors:  Jeroen A van Kan; Ce Zhang; Piravi Perumal Malar; Johan R C van der Maarel
Journal:  Biomicrofluidics       Date:  2012-07-30       Impact factor: 2.800

3.  Knotting of linear DNA in nano-slits and nano-channels: a numerical study.

Authors:  Enzo Orlandini; Cristian Micheletti
Journal:  J Biol Phys       Date:  2013-03-05       Impact factor: 1.365

4.  Density fluctuations dispersion relationship for a polymer confined to a nanotube.

Authors:  Joshua H Carpenter; Alena Karpusenko; Junhan Pan; Shuang Fang Lim; Robert Riehn
Journal:  Appl Phys Lett       Date:  2011-06-21       Impact factor: 3.791

5.  Mechanisms of spontaneous chain formation and subsequent microstructural evolution in shear-driven strongly confined drop monolayers.

Authors:  Sagnik Singha; Abhilash Reddy Malipeddi; Mauricio Zurita-Gotor; Kausik Sarkar; Kevin Shen; Michael Loewenberg; Kalman B Migler; Jerzy Blawzdziewicz
Journal:  Soft Matter       Date:  2019-06-19       Impact factor: 3.679

6.  Measuring the wall depletion length of nanoconfined DNA.

Authors:  Aditya Bikram Bhandari; Jeffrey G Reifenberger; Hui-Min Chuang; Han Cao; Kevin D Dorfman
Journal:  J Chem Phys       Date:  2018-09-14       Impact factor: 3.488

7.  Hydrodynamics of DNA confined in nanoslits and nanochannels.

Authors:  Kevin D Dorfman; Damini Gupta; Aashish Jain; Abhiram Muralidhar; Douglas R Tree
Journal:  Eur Phys J Spec Top       Date:  2014-12-01       Impact factor: 2.707

Review 8.  Beyond gel electrophoresis: microfluidic separations, fluorescence burst analysis, and DNA stretching.

Authors:  Kevin D Dorfman; Scott B King; Daniel W Olson; Joel D P Thomas; Douglas R Tree
Journal:  Chem Rev       Date:  2012-11-12       Impact factor: 60.622

9.  Tandem array of nanoelectronic readers embedded coplanar to a fluidic nanochannel for correlated single biopolymer analysis.

Authors:  Leonardo Lesser-Rojas; K K Sriram; Kuo-Tang Liao; Shui-Chin Lai; Pai-Chia Kuo; Ming-Lee Chu; Chia-Fu Chou
Journal:  Biomicrofluidics       Date:  2014-01-10       Impact factor: 2.800

10.  Revisiting blob theory for DNA diffusivity in slitlike confinement.

Authors:  Liang Dai; Douglas R Tree; Johan R C van der Maarel; Kevin D Dorfman; Patrick S Doyle
Journal:  Phys Rev Lett       Date:  2013-04-19       Impact factor: 9.161

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