Literature DB >> 20572250

Protocols for the sequential solid-state NMR spectroscopic assignment of a uniformly labeled 25 kDa protein: HET-s(1-227).

Anne Schuetz1, Christian Wasmer, Birgit Habenstein, René Verel, Jason Greenwald, Roland Riek, Anja Böckmann, Beat H Meier.   

Abstract

The sequence-specific resonance assignment of a protein forms the basis for studies of molecular structure and dynamics, as well as to functional assay studies by NMR spectroscopy. Here we present a protocol for the sequential 13C and 15N resonance assignment of uniformly [15N,13C]-labeled proteins, based on a suite of complementary three-dimensional solid-state NMR spectroscopy experiments. It is directed towards the application to proteins with more than about 100 amino acid residues. The assignments rely on a walk along the backbone by using a combination of three experiments that correlate nitrogen and carbon spins, including the well-dispersed Cbeta resonances. Supplementary spectra that correlate further side-chain resonances can be important for identifying the amino acid type, and greatly assist the assignment process. We demonstrate the application of this assignment protocol for a crystalline preparation of the N-terminal globular domain of the HET-s prion, a 227-residue protein.

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Year:  2010        PMID: 20572250     DOI: 10.1002/cbic.201000124

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  32 in total

1.  Structure and assembly of the mouse ASC inflammasome by combined NMR spectroscopy and cryo-electron microscopy.

Authors:  Lorenzo Sborgi; Francesco Ravotti; Venkata P Dandey; Mathias S Dick; Adam Mazur; Sina Reckel; Mohamed Chami; Sebastian Scherer; Matthias Huber; Anja Böckmann; Edward H Egelman; Henning Stahlberg; Petr Broz; Beat H Meier; Sebastian Hiller
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-13       Impact factor: 11.205

2.  Protein resonance assignment at MAS frequencies approaching 100 kHz: a quantitative comparison of J-coupling and dipolar-coupling-based transfer methods.

Authors:  Susanne Penzel; Albert A Smith; Vipin Agarwal; Andreas Hunkeler; Mai-Liis Org; Ago Samoson; Anja Böckmann; Matthias Ernst; Beat H Meier
Journal:  J Biomol NMR       Date:  2015-08-13       Impact factor: 2.835

3.  Spectral editing at ultra-fast magic-angle-spinning in solid-state NMR: facilitating protein sequential signal assignment by HIGHLIGHT approach.

Authors:  Songlin Wang; Isamu Matsuda; Fei Long; Yoshitaka Ishii
Journal:  J Biomol NMR       Date:  2016-01-19       Impact factor: 2.835

4.  Dual acquisition magic-angle spinning solid-state NMR-spectroscopy: simultaneous acquisition of multidimensional spectra of biomacromolecules.

Authors:  T Gopinath; Gianluigi Veglia
Journal:  Angew Chem Int Ed Engl       Date:  2012-02-06       Impact factor: 15.336

5.  Properties of the DREAM scheme and its optimization for application to proteins.

Authors:  Thomas Westfeld; René Verel; Matthias Ernst; Anja Böckmann; Beat H Meier
Journal:  J Biomol NMR       Date:  2012-05-05       Impact factor: 2.835

6.  Efficient band-selective homonuclear CO-CA cross-polarization in protonated proteins.

Authors:  Veniamin Chevelkov; Chaowei Shi; Hannes Klaus Fasshuber; Stefan Becker; Adam Lange
Journal:  J Biomol NMR       Date:  2013-08-08       Impact factor: 2.835

7.  Extensive de novo solid-state NMR assignments of the 33 kDa C-terminal domain of the Ure2 prion.

Authors:  Birgit Habenstein; Christian Wasmer; Luc Bousset; Yannick Sourigues; Anne Schütz; Antoine Loquet; Beat H Meier; Ronald Melki; Anja Böckmann
Journal:  J Biomol NMR       Date:  2011-07-31       Impact factor: 2.835

8.  3D MAS NMR Experiment Utilizing Through-Space 15N-15N Correlations.

Authors:  Kevin J Donovan; Robert Silvers; Sara Linse; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2017-05-03       Impact factor: 15.419

9.  Solid state NMR of proteins at high MAS frequencies: symmetry-based mixing and simultaneous acquisition of chemical shift correlation spectra.

Authors:  Peter Bellstedt; Christian Herbst; Sabine Häfner; Jörg Leppert; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2012-11-23       Impact factor: 2.835

10.  Combination of ¹⁵N reverse labeling and afterglow spectroscopy for assigning membrane protein spectra by magic-angle-spinning solid-state NMR: application to the multidrug resistance protein EmrE.

Authors:  James R Banigan; Anindita Gayen; Nathaniel J Traaseth
Journal:  J Biomol NMR       Date:  2013-03-29       Impact factor: 2.835

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